CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42890

Gene name SCP2 (STEROL CARRIER PROTEIN 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB S.X. H.G.
0.91 95.6 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.91 95.6 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF S.X. H.G.
0.86 93.1 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. S.X. H.G.
0.75 86.9 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 S.X. H.G.
0.71 84.2 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA S.X. H.G.
0.60 75.7 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
84.7 99.9 E-MEXP-1607-raw-cel-1620685818
70.4 99.9 E-MEXP-1607-raw-cel-1620685834
68.0 99.9 E-MEXP-1607-raw-cel-1620685794
65.5 99.8 GSM109112 vte1-1(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
64.8 99.8 E-MEXP-1607-raw-cel-1620685826
64.5 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
62.0 99.8 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
59.6 99.8 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
57.3 99.8 GSM134309 Penfield_1-11_embryo-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
56.7 99.8 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-1 36 At1g08340 837354 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA C.G. S.X.
0.04 7e-1 34 At4g10880 826687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.00 7e-1 34 At2g45540 819162 WD-40 repeat family protein / beige-related F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA C.G. S.X.
0.02 7e-1 34 At1g15710 838140 prephenate dehydrogenase family protein F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAM C.G. S.X.
0.01 7e-1 34 At1g26680 839209 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM C.G. S.X.
0.01 3e+0 32 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation C.G. S.X.
0.01 3e+0 32 At5g40480 834046 EMB3012 (embryo defective 3012) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBP C.G. S.X.
0.02 3e+0 32 At4g39280 830084 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative F:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 5e-18 91 Glycine max GmaAffx.91594.1.S1_at CF807319 - - 7e-18 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.08 9e-5 46 Hordeum vulgare Contig8056_at Contig8056 - - 4e-4 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.13 6e-6 52 Oryza sativa Os06g0211300 AK060015.1 - Sterol-binding domain containing protein 1e-5 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.28 5e-27 121 Populus trichocarpa Ptp.4953.1.S1_s_at CV283679 hypothetical protein - 8e-27 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.19 3e-3 42 Triticum aestivum Ta.26323.1.A1_at CD490702 - - 5e-3 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.45 8e-35 145 Vitis vinifera 1613869_at CB918601 hypothetical protein LOC100245425 - 6e-34 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
0.17 3e-10 63 Zea mays Zm.3633.5.A1_at CF624117 peroxisomal multifunctional enzyme type 2 - 2e-9 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006635 A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
X GO:0009845 The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
X GO:0046487 The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
S GO:0032365 The directed movement of lipids within cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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