Gene omics information

Query gene ID At5g42890
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBS.X.H.G.
0.9195.6At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.S.X.H.G.
0.9195.6At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFS.X.H.G.
0.8693.1At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.S.X.H.G.
0.7184.2At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAS.X.H.G.
0.6075.7At5g11520831024ASP3 (ASPARTATE AMINOTRANSFERASE 3)Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
65.599.8GSM109112vte1-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
64.599.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
62.099.8GSM134306Penfield_1-8_endosperm-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
59.699.8GSM134307Penfield_1-9_endosperm-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
57.399.8GSM134309Penfield_1-11_embryo-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
56.799.8GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-136At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAC.G.S.X.
0.047e-134At4g10880826687unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.007e-134At2g45540819162WD-40 repeat family protein / beige-relatedF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAC.G.S.X.
0.027e-134At1g15710838140prephenate dehydrogenase family proteinF:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAMC.G.S.X.
0.017e-134At1g26680839209transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBMC.G.S.X.
0.013e+032At5g48390834894ATZIP4Defective in meiotic chromosome segregationC.G.S.X.
0.013e+032At5g40480834046EMB3012 (embryo defective 3012)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBPC.G.S.X.
0.023e+032At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.345e-1891Glycine maxGmaAffx.91594.1.S1_atCF807319--7e-18At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.089e-546Hordeum vulgareContig8056_atContig8056--4e-4At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.136e-652Oryza sativaOs06g0211300AK060015.1-Sterol-binding domain containing protein1e-5At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.285e-27121Populus trichocarpaPtp.4953.1.S1_s_atCV283679hypothetical protein-8e-27At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.193e-342Triticum aestivumTa.26323.1.A1_atCD490702--5e-3At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.458e-35145Vitis vinifera1613869_atCB918601hypothetical protein LOC100245425-6e-34At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
0.173e-1063Zea maysZm.3633.5.A1_atCF624117peroxisomal multifunctional enzyme type 2-2e-9At5g42890SCP2 (STEROL CARRIER PROTEIN 2)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0006635A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
XGO:0009845The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
XGO:0046487The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
SGO:0032365The directed movement of lipids within cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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