CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42830

Gene name transferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At5g42830 834294 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.37 45.0 At2g18690 816384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PB S.X. H.G.
0.32 35.7 At3g11840 820357 PUB24 (PLANT U-BOX 24) Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
0.32 35.7 At5g01550 831700 LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
0.31 33.8 At3g01290 821309 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:mitochondrion, plasma membrane, vacuole, membrane;BOMFPAV S.X. H.G.
0.31 33.8 At1g18380 - - - S.X. H.G.
0.30 32.1 At1g61360 842430 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.26 24.4 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.25 22.6 At4g39830 830142 L-ascorbate oxidase, putative F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA S.X. H.G.
0.23 19.3 At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.9 100.0 E-NASC-76-raw-cel-1359878900
146.0 99.9 E-NASC-76-raw-cel-1359878976
143.8 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
114.8 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
108.5 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
107.4 99.9 E-NASC-76-raw-cel-1359879158
83.1 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
73.4 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
71.2 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
68.6 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 3e-31 137 At5g07870 830680 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.25 2e-28 127 At5g07850 830678 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.35 4e-27 123 At5g07860 830679 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.02 2e-1 38 At5g67160 836851 EPS1 (ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1) Encodes a member of the BAHD acyltransferase superfamily. Mutants have enhanced susceptibility to virulent and avirulent pathogens and are defective in pathogen induced SA biosynthesis. EPS1 may act upstream of SA biosynthesis as application of SA can rescue the mutant phenotype. C.G. S.X.
0.01 7e-1 36 At4g38560 830013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV C.G. S.X.
0.01 7e-1 36 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. C.G. S.X.
0.01 7e-1 36 At3g44870 823621 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.01 7e-1 36 At2g45510 819159 CYP704A2 member of CYP704A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-6 54 Glycine max Gma.17929.1.A1_at AW311001 - - 9e-1 At5g07850 transferase family protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HV_CEa0006I19r2_at HV_CEa0006I19r2 - - 2e-1 At3g60961 ATP binding / nucleobase, nucleoside, nucleotide kinase C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.12495.1.S1_at - - - 0 C.G. S.X.
0.04 6e-2 40 Populus trichocarpa Ptp.3032.1.S1_s_at DN494443 hypothetical protein - 6e-3 At5g07850 transferase family protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.30206.1.S1_at CA627135 - - 1e-9 At3g14100 oligouridylate-binding protein, putative C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617046_at CF512505 hypothetical protein LOC100244517 - 2e-1 At1g68160 unknown protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.12792.1.A1_at CA398944 hypothetical protein LOC100272306 - 4e-1 At1g69040 ACR4 (ACT REPEAT 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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