CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42800

Gene name DFR (DIHYDROFLAVONOL 4-REDUCTASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. S.X. H.G.
0.89 94.6 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM S.X. H.G.
0.86 93.1 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO S.X. H.G.
0.73 85.5 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF S.X. H.G.
0.73 85.5 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
208.1 100.0 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
174.4 100.0 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
166.0 100.0 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
153.1 99.9 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
151.8 99.9 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
135.2 99.9 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
123.9 99.9 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
118.7 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
101.6 99.9 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
101.5 99.9 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-3 44 At2g02400 814771 cinnamoyl-CoA reductase family F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:plasma membrane;BOPFMAV C.G. S.X.
0.01 6e-1 36 At5g53840 835465 F-box family protein (FBL13) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 36 At5g67360 836871 ARA12 Encodes a subtilisin-like serine protease essential for mucilage release from seed coats. C.G. S.X.
0.01 6e-1 36 At1g20970 838691 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV C.G. S.X.
0.02 2e+0 34 At5g67270 836862 ATEB1C (microtubule end binding protein 1) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. C.G. S.X.
0.01 2e+0 34 At5g01720 831688 F-box family protein (FBL3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFBV C.G. S.X.
0.01 2e+0 34 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g48830 834941 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO C.G. S.X.
0.01 2e+0 34 At5g22540 832315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-14 81 Glycine max Gma.5313.1.S1_at AF167556.1 dihydroflavonol-4-reductase DFR1 - 1e-14 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig14242_at Contig14242 - - 1e+0 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os01g0633500 AB003496.1 - NADPH-dependent reductase A1 (Fragment) 1e-2 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.09 2e-1 38 Populus trichocarpa PtpAffx.25553.1.A1_at CV268741 dihydroflavonol 4-reductase - 2e-1 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.03 4e-5 50 Triticum aestivum TaAffx.143995.15.A1_at AF434703 - - 4e-5 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.13 2e-13 75 Vitis vinifera 1620675_at CB969894 dihydroflavonol reductase - 8e-13 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
0.06 3e-4 46 Zea mays Zm.11943.1.S1_at CO523092 dihydroflavonol-4-reductase - 7e-4 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009718 The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00061 Flavonoids biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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