CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42760

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.57 73.8 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO S.X. H.G.
0.38 46.7 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.33 38.1 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA S.X. H.G.
0.19 12.7 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.6 99.9 GSM131392 AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
116.4 99.9 GSM142804 SS001_ATH1_A7-Smith-10 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
84.0 99.9 GSM131391 AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
74.4 99.9 GSM142815 SS002_ATH1_A7-smith-13h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
63.7 99.8 Evans_2-2_col-WT-cold_ATH1
59.6 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.2 99.8 GSM142663 NE001_ATH1_A1-Evans-w20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
45.1 99.8 Evans_2-4_fab1-mut-cold_ATH1
42.8 99.8 GSM142666 NE001_ATH1_A4-Evans-m20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
42.0 99.8 E-MEXP-557-raw-cel-879731502
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g21980 821757 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e-1 36 At5g60700 836191 glycosyltransferase family protein 2 F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;OPFBM C.G. S.X.
0.02 5e-1 36 At4g09060 826484 unknown protein F:unknown;P:unknown;C:membrane;MOFBPAV C.G. S.X.
0.02 5e-1 36 At1g69560 843292 MYB105 (myb domain protein 105) Encodes a putative transcription factor (MYB105). C.G. S.X.
0.02 2e+0 34 At5g23920 832457 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;P C.G. S.X.
0.02 2e+0 34 At5g53810 835462 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM C.G. S.X.
0.01 2e+0 34 At5g51770 835251 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA C.G. S.X.
0.02 2e+0 34 At4g28640 828982 IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11) Auxin induced gene, IAA11 (IAA11). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Glycine max GmaAffx.87199.1.S1_at BU551000 - - 1e-44 At1g45150 unknown protein C.G. S.X.
0.03 6e-2 38 Hordeum vulgare HVSMEb0011C24r2_at HVSMEb0011C24r2 - - 7e-2 At5g42760 - C.G. S.X.
0.03 3e-1 38 Oryza sativa Os.12046.1.S1_at - - - 0 C.G. S.X.
0.27 6e-20 99 Populus trichocarpa PtpAffx.655.1.A1_at CV237213 hypothetical protein - 5e-20 At5g42760 - C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.42890.1.A1_at BQ169239 - - 3e+0 At5g57450 XRCC3 C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620435_at CD721251 - - 9e-2 At1g12290 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9760.1.A1_at BM335574 hypothetical protein LOC100278683 - 1e+0 At5g67060 HEC1 (HECATE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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