CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42670

Gene name agenet domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.24 20.7 At5g42670 834276 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;PMO S.X. H.G.
0.22 17.5 At2g03050 814834 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.11 4.1 At4g32900 829426 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;MOAFPV S.X. H.G.
0.11 4.1 At5g06770 830566 KH domain-containing protein / zinc finger (CCCH type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOF S.X. H.G.
0.08 2.3 At5g17660 831632 tRNA (guanine-N7-)-methyltransferase F:tRNA (guanine-N7-)-methyltransferase activity;P:tRNA modification;C:chloroplast;BOMPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.6 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.1 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.5 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.6 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.7 99.5 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
15.0 99.4 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.0 99.4 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
14.9 99.4 E-MEXP-300-raw-cel-460515489
14.9 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.9 99.4 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g58060 824975 cation efflux family protein / metal tolerance protein, putative (MTPc3) F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BFOPAM C.G. S.X.
0.02 4e-1 36 At5g23810 832446 AAP7 Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies. C.G. S.X.
0.01 2e+0 34 At5g56250 835724 HAP8 (HAPLESS 8) F:unknown;P:unknown;C:chloroplast;MPOFB C.G. S.X.
0.09 2e+0 34 At5g52070 835283 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At5g20640 832187 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P C.G. S.X.
0.01 2e+0 34 At5g22320 832292 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.02 2e+0 34 At5g57830 835893 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.66404.1.S1_at AW278767 - - 2e-1 At1g47720 OSB1 (Organellar Single-stranded) C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HA05i14r_at HA05i14r - - 3e+0 At2g29420 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) C.G. S.X.
0.03 9e-1 36 Oryza sativa Os.23415.1.A1_s_at - - - 0 C.G. S.X.
0.05 1e-2 42 Populus trichocarpa Ptp.4806.1.S1_at BU892143 hypothetical protein - 7e-3 At5g42670 agenet domain-containing protein C.G. S.X.
0.03 2e-3 44 Triticum aestivum TaAffx.107571.1.S1_at CA697864 - - 1e-3 At5g42670 agenet domain-containing protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618186_x_at CF206335.1 - - 2e+0 At5g42670 agenet domain-containing protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.18029.1.A1_at BG842376 hypothetical protein LOC100191174 - 6e-1 At5g42670 agenet domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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