CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42600

Gene name MRN1 (MARNERAL SYNTHASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. S.X. H.G.
0.89 94.6 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family S.X. H.G.
0.84 91.9 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.75 86.9 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.75 86.9 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.70 83.5 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.67 81.6 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.64 78.9 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.63 78.1 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
152.0 99.9 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
151.6 99.9 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
140.0 99.9 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
134.1 99.9 GSM39192 RRE1_C2 GSE2169 rre1 and rre2 mutants
130.4 99.9 GSM39210 RRE2_C4 GSE2169 rre1 and rre2 mutants
124.9 99.9 GSM39193 RRE1_C3 GSE2169 rre1 and rre2 mutants
123.9 99.9 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
122.7 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
119.6 99.9 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
118.4 99.9 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 5e-148 525 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. C.G. S.X.
0.64 5e-148 525 At1g78500 844186 pentacyclic triterpene synthase, putative Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin. C.G. S.X.
0.49 6e-95 349 At5g36150 833612 ATPEN3 (putative pentacyclic triterpene synthase 3) F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFM C.G. S.X.
0.58 2e-64 248 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. C.G. S.X.
0.56 3e-44 180 At4g15340 827200 ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast. C.G. S.X.
0.08 5e-9 63 At1g78950 844234 beta-amyrin synthase, putative F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMA C.G. S.X.
0.06 1e-6 56 At1g78955 844235 CAMS1 (Camelliol C synthase 1) F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFM C.G. S.X.
0.04 8e-5 50 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-7 57 Glycine max Gma.16877.1.S1_at AY095999.1 beta-amyrin synthase - 7e-30 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.03 9e+0 32 Hordeum vulgare Contig11705_at Contig11705 - - 3e-29 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
0.01 9e+0 34 Oryza sativa OsAffx.25306.1.S1_at - - - 0 C.G. S.X.
0.06 1e-7 59 Populus trichocarpa PtpAffx.224583.1.S1_at pmrna43248 hypothetical protein - 2e-26 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.93245.1.A1_at BJ217689 - - 1e+0 At4g40011 unknown protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1608363_at BQ793731 hypothetical protein LOC100247075 - 1e+0 At2g15240 UNC-50 family protein C.G. S.X.
0.03 2e+0 34 Zea mays Zm.5697.2.S1_at AI834433 - - 5e-25 At2g07050 CAS1 (cycloartenol synthase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016104 The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.
C GO:0019745 The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00419 Triterpenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00100 Steroid biosynthesis
01062 Biosynthesis of terpenoids and steroids
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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