CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42580

Gene name CYP705A12

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family S.X. H.G.
0.92 96.0 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. S.X. H.G.
0.82 90.9 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.64 78.9 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.55 70.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.53 68.6 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
0.52 67.4 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.50 65.3 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
227.8 100.0 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
224.5 100.0 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
218.4 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
147.2 99.9 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
140.5 99.9 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
138.8 99.9 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
131.1 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
127.1 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
125.5 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
118.4 99.9 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 5e-39 163 At2g05180 815066 CYP705A6 member of CYP705A C.G. S.X.
0.30 4e-33 143 At3g20130 821556 CYP705A22 member of CYP705A C.G. S.X.
0.41 3e-28 127 At3g20110 821554 CYP705A20 member of CYP705A C.G. S.X.
0.34 6e-26 119 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family C.G. S.X.
0.39 6e-23 109 At4g15350 827201 CYP705A2 member of CYP705A C.G. S.X.
0.25 2e-22 107 At4g15330 827199 CYP705A1 a member of the cytochrome P450 family C.G. S.X.
0.40 1e-20 101 At4g15380 827204 CYP705A4 member of CYP705A C.G. S.X.
0.44 1e-20 101 At3g20950 821645 CYP705A32 member of CYP705A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 40 Glycine max Gma.8425.1.S1_s_at D83968.1 - - 4e-3 At5g06900 CYP93D1 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig4415_at Contig4415 - - 3e-1 At2g18490 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.7710.1.S1_at - - - 0 C.G. S.X.
0.04 4e-3 44 Populus trichocarpa PtpAffx.224441.1.S1_at pmrna42984 cytochrome P450 - 1e-2 At4g15360 CYP705A3 C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.83046.1.S1_at CA662735 - - 3e+0 At2g35658 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622328_at BQ792670 hypothetical protein LOC100264834 - 3e-32 At2g05310 unknown protein C.G. S.X.
0.03 5e+0 32 Zea mays Zm.8089.1.S1_at BM072889 hypothetical protein LOC100274015 - 5e-1 At5g25900 GA3 (GA REQUIRING 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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