CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42350

Gene name kelch repeat-containing F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.90 95.1 At5g42350 834241 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB S.X. H.G.
0.42 53.9 At1g60780 842372 HAP13 (HAPLESS 13) F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP S.X. H.G.
0.42 53.9 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB S.X. H.G.
0.41 52.4 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.40 50.8 At1g43690 840956 ubiquitin interaction motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP S.X. H.G.
0.39 48.4 At5g15880 831445 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.37 45.0 At3g17430 821007 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB S.X. H.G.
0.37 45.0 At1g74800 843819 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB S.X. H.G.
0.36 43.6 At1g04910 839373 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;P S.X. H.G.
0.35 41.6 At3g63150 825490 MIRO2 (MIRO-RELATED GTP-ASE 2) Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.0 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.2 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.0 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.1 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.0 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.99 0 3091 At5g42360 834242 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB C.G. S.X.
0.01 2e-1 38 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.01 8e-1 36 At1g78640 844200 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 8e-1 36 At1g45403 841098 membrane protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e+0 34 At5g58870 836004 ftsh9 (FtsH protease 9) encodes an FtsH protease that is localized to the chloroplast C.G. S.X.
0.00 3e+0 34 At5g53460 835427 GLT1 NADH-dependent glutamate synthase C.G. S.X.
0.01 3e+0 34 At4g16670 827369 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO C.G. S.X.
0.01 3e+0 34 At4g39780 830136 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.02 3e+0 34 At4g03600 825660 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Glycine max Gma.15897.1.S1_at CD413175 - - 2e-4 At5g42350 kelch repeat-containing F-box family protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HS15C17r_at HS15C17r - - 2e-2 At3g45260 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 7e+0 34 Oryza sativa OsAffx.16585.1.S1_s_at - - - 0 C.G. S.X.
0.20 2e-14 81 Populus trichocarpa PtpAffx.205885.1.S1_at pmrna11666 hypothetical protein - 6e-15 At5g42350 kelch repeat-containing F-box family protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.7864.1.A1_at BQ160818 - - 6e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1610902_at BQ800284 - - 2e+0 At4g19390 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8797.1.A1_at BM269434 nuclear transcription factor Y subunit B-3 - 2e-16 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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