Gene omics information

Query gene ID At5g42340
Gene name binding / ubiquitin-protein ligase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g42340834240binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBVS.X.H.G.
0.6781.6At2g35210818088RPA (ROOT AND POLLEN ARFGAP)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.6781.6At5g36260833623aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOS.X.H.G.
0.4050.8At3g20200821564protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.4050.8At3g61230825295LIM domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
320.4100.0GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
241.4100.0E-MEXP-1138-raw-cel-1432773258
229.4100.0E-MEXP-1138-raw-cel-1432773322
228.6100.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
220.3100.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
219.2100.0GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
190.5100.0E-MEXP-1138-raw-cel-1432773290
188.2100.0GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
126.999.9E-MEXP-1138-raw-cel-1432772938
126.099.9E-MEXP-1138-raw-cel-1432773354
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-344At2g31890817747RAPProtein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.C.G.S.X.
0.012e-242At5g62190836340PRH75DEAD/DEAH box RNA helicase PRH75C.G.S.X.
0.012e-242At4g179056241286ATL4HPutative RING-H2 finger protein ATL4H.C.G.S.X.
0.022e-242At3g46510823804PUB13 (PLANT U-BOX 13)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.C.G.S.X.
0.012e-242At3g54850824650PUB14Encodes a protein with ubiquitin ligase activity.C.G.S.X.
0.012e-242At1g60200842315splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:mRNA processing;C:chloroplast;MOFBPVAC.G.S.X.
0.012e-242At1g05520837054transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:transport, response to salt stress;C:COPII vesicle coat;MFOPC.G.S.X.
0.016e-240At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.011e+036Glycine maxGmaAffx.30851.2.S1_atBE473679--6e-2At1g19980cytomatrix protein-relatedC.G.S.X.
0.022e+034Hordeum vulgareContig21716_atContig21716--1e+1At3g27270-C.G.S.X.
0.012e+036Oryza sativaOs02g0700500AK068055.1-Amino acid/polyamine transporter I family protein4e-6At5g05630amino acid permease family proteinC.G.S.X.
0.171e-1689Populus trichocarpaPtpAffx.201550.1.S1_atpmrna3045hypothetical protein-1e-12At5g42340binding / ubiquitin-protein ligaseC.G.S.X.
0.034e-654Triticum aestivumTaAffx.37258.1.S1_atBJ289873--4e+0At5g14660PDF1B (PEPTIDE DEFORMYLASE 1B)C.G.S.X.
0.021e-344Vitis vinifera1611462_atCF403264hypothetical protein LOC100250244-2e-1At4g16295SPH1 (S-PROTEIN HOMOLOGUE 1)C.G.S.X.
0.012e+034Zea maysZm.547.1.A1_atCK827104glutathione transferase17-1e-1At1g02405proline-rich family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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