CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42120

Gene name lectin protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g42120 834217 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.71 84.2 At5g63390 836458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.65 79.6 At3g09790 820137 UBQ8 encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. S.X. H.G.
0.65 79.6 At2g07130 3767761 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.64 78.9 At1g55060 841949 UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product S.X. H.G.
0.63 78.1 At3g43820 3769603 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At4g20510 827799 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At2g07713 815387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.63 78.1 At5g58850 836002 MYB119 (MYB DOMAIN PROTEIN 119) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119). S.X. H.G.
0.62 77.3 At1g49100 841333 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
312.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
294.7 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
277.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
254.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
233.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
232.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
229.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
221.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.1 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-6 54 At5g55830 835677 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 1e-3 46 At5g10530 830918 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 4e-3 44 At1g53070 841741 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBO C.G. S.X.
0.01 2e-2 42 At5g35580 833523 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 2e-2 42 At5g61350 836256 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-2 42 At2g48010 819413 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) receptor-like serine/threonine kinase (RKF3) C.G. S.X.
0.02 2e-2 42 At1g07460 837258 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO C.G. S.X.
0.01 7e-2 40 At4g02420 828035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-2 40 At4g21430 827895 B160 F:protein binding, transcription factor activity, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Glycine max PsAffx.CL904Contig1_s_at PsAffx.CL904Contig1 - - 3e-1 At4g39200 40S ribosomal protein S25 (RPS25E) C.G. S.X.
0.03 1e-1 38 Hordeum vulgare HS16P03u_at HS16P03u - - 5e-3 At5g62460 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-2 42 Oryza sativa Os.9093.1.S1_at - - - 0 C.G. S.X.
0.13 1e-7 59 Populus trichocarpa PtpAffx.205597.1.S1_at pmrna11050 hypothetical protein - 7e-8 At5g42120 lectin protein kinase family protein C.G. S.X.
0.04 8e-8 59 Triticum aestivum TaAffx.25780.1.S1_at CA696239 - - 2e-8 At5g42120 lectin protein kinase family protein C.G. S.X.
0.02 8e-5 48 Vitis vinifera 1606945_at CF513943 - - 3e-11 At1g05055 GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.8505.1.A1_at AY107567.1 - - 1e-4 At1g51870 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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