CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g42100

Gene name ATBG_PAP

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd S.X. H.G.
1.00 100.0 At4g04890 825828 PDF2 (PROTODERMAL FACTOR 2) Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. S.X. H.G.
0.75 86.9 At4g00180 827914 YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. S.X. H.G.
0.67 81.6 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. S.X. H.G.
0.67 81.6 At5g19290 832049 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 99.4 E-MEXP-1246-raw-cel-1504120261
11.7 99.3 E-MEXP-1246-raw-cel-1504120171
9.6 99.1 GSM128732 Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
9.5 99.1 E-MEXP-849-raw-cel-1181980950
9.0 99.1 E-MEXP-849-raw-cel-1181980966
8.9 99.0 E-MEXP-1246-raw-cel-1504120291
8.8 99.0 GSM128734 Hennig_1-6_siliques-CK_021114_3_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.6 99.0 GSM128733 Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.4 99.0 GSM128731 Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.2 99.0 GSM245237 0hr DEX Replicate 2 GSE9702 Identification of putative targets of AP3/PI
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-5 50 At3g23770 821959 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO C.G. S.X.
0.03 2e-4 48 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO C.G. S.X.
0.03 3e-3 44 At4g27310 828839 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;MOFPBVA C.G. S.X.
0.01 1e-2 42 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.02 4e-2 40 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO C.G. S.X.
0.02 2e-1 38 At5g14370 831288 - F:unknown;P:unknown;C:chloroplast;POMFB C.G. S.X.
0.07 2e-1 38 At1g32860 840180 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF C.G. S.X.
0.01 6e-1 36 At5g04930 830375 ALA1 (aminophospholipid ATPase1) Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max Gma.6772.1.S1_at AW349464 - - 2e+0 At5g61412 unknown protein C.G. S.X.
0.10 1e-9 63 Hordeum vulgare Contig5219_s_at Contig5219 - - 3e-9 At5g42100 ATBG_PAP C.G. S.X.
0.06 3e-4 48 Oryza sativa Os05g0443400 AK072943.1 - Glycoside hydrolase, family 17 protein 3e-4 At5g42100 ATBG_PAP C.G. S.X.
0.05 9e-1 36 Populus trichocarpa PtpAffx.58602.1.A1_s_at CV251402 - - 4e-1 At5g42100 ATBG_PAP C.G. S.X.
0.09 7e-7 56 Triticum aestivum Ta.5662.1.S1_x_at BG908113 - - 8e-7 At5g42100 ATBG_PAP C.G. S.X.
0.10 2e-4 46 Vitis vinifera 1610324_a_at CB346041 hypothetical protein LOC100254667 - 8e-4 At5g42100 ATBG_PAP C.G. S.X.
0.05 7e-2 38 Zea mays Zm.8484.1.A1_at CD974829 hypothetical protein LOC100279952 - 9e-2 At5g42100 ATBG_PAP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0007154 Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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