Gene omics information

Query gene ID At5g41850
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g41850834190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFS.X.H.G.
0.5773.8At5g17250831589catalytic/ transferaseF:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBPS.X.H.G.
0.5570.6At2g35540818119DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAS.X.H.G.
0.5065.3At4g00590827968asparaginase 2 family proteinF:hydrolase activity;P:unknown;C:unknown;BOMFPAS.X.H.G.
0.4963.5At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFS.X.H.G.
0.4761.2At3g01380821231catalytic/ transferaseF:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endoplasmic reticulum;MFOPBS.X.H.G.
0.4659.8At3g44740823604ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide bindingF:glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation;C:endomembrane system, cytoplasm;OBMAFPS.X.H.G.
0.4659.8At2g27340817277-F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBPS.X.H.G.
0.4558.3At5g64970836621mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, plastid;MFPOS.X.H.G.
0.4457.2At5g17240831588SDG40 (SET DOMAIN GROUP 40)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
138.399.9GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
119.099.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.699.8GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
51.699.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.399.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
39.299.8GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
33.399.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.199.7GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.299.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.099.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e+034At5g13680831213ABO1 (ABA-OVERLY SENSITIVE 1)A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.C.G.S.X.
0.021e+034At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOC.G.S.X.
0.011e+034At4g33510829489DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)Enzyme catalyzing the first committed step in aromatic amino acid biosynthesisC.G.S.X.
0.011e+034At4g22970828396AESP (ARABIDOPSIS HOMOLOG OF SEPARASE)Putative separase gene, homologous to human and mouse separase protein. It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. AESP plays an essential role in embryo development and is required for the removal of cohesin from meiotic chromosomes.C.G.S.X.
0.031e+034At3g47540823908chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOFC.G.S.X.
0.011e+034At2g343572745580bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.011e+034At2g26450817185pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.43241.1.A1_atCD390360--7e-1At1g49230zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.042e-136Hordeum vulgareContig12001_atContig12001--1e-1At5g57015ckl12 (Casein Kinase I-like 12)C.G.S.X.
0.117e-446Oryza sativaOs05g02144009633.m01099-Esterase/lipase/thioesterase domain containingprotein4e-4At5g41850unknown proteinC.G.S.X.
0.271e-1377Populus trichocarpaPtpAffx.37600.1.S1_atCV231719hypothetical protein-2e-13At5g41850unknown proteinC.G.S.X.
0.035e+032Triticum aestivumTaAffx.81069.1.S1_atCA689778--1e+1At5g63130octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinC.G.S.X.
0.163e-238Vitis vinifera1622038_atCB005431hypothetical protein LOC100251859-8e-2At5g41850unknown proteinC.G.S.X.
0.026e-134Zea maysZm.18577.1.A1_atCK985587hypothetical protein LOC100273039-4e-1At1g15810ribosomal protein S15 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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