CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g41790

Gene name CIP1 (COP1-INTERACTIVE PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g41790 834184 CIP1 (COP1-INTERACTIVE PROTEIN 1) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. S.X. H.G.
0.36 43.6 At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family S.X. H.G.
0.25 22.6 At5g09670 830826 loricrin-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV S.X. H.G.
0.14 6.8 At2g31820 817739 ankyrin repeat family protein F:protein binding;P:unknown;C:plasma membrane;MOFBPVA S.X. H.G.
0.12 4.9 At5g45430 834579 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA S.X. H.G.
0.07 1.9 At5g49580 835020 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.04 0.9 At2g26280 817168 CID7 smr (Small MutS Related) domain-containing protein mRNA, complete cds S.X. H.G.
0.03 0.6 At1g77800 844117 PHD finger family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.1 99.7 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.0 99.7 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.8 99.7 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.2 99.7 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
26.9 99.7 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
26.1 99.7 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
25.3 99.6 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.8 99.6 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.9 99.6 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
23.2 99.6 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 1e-32 143 At1g64330 842739 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV C.G. S.X.
0.01 2e-1 40 At5g49945 835058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFBP C.G. S.X.
0.01 6e-1 38 At5g44495 5008294 - Encodes a ECA1 gametogenesis related family protein C.G. S.X.
0.01 6e-1 38 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF C.G. S.X.
0.01 6e-1 38 At4g35290 829682 GLUR2 (GLUTAMATE RECEPTOR 2) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 2e+0 36 At5g07140 830605 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 2e+0 36 At5g10530 830918 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 36 At5g58030 835915 transport protein particle (TRAPP) component Bet3 family protein F:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-1 38 Glycine max GmaAffx.72539.1.S1_at BG047426 - - 5e-1 At3g09990 equilibrative nucleoside transporter, putative (ENT2) C.G. S.X.
0.01 1e+0 36 Hordeum vulgare HM13J15r_at HM13J15r - - 3e-1 At1g78440 ATGA2OX1 (gibberellin 2-oxidase 1) C.G. S.X.
0.01 1e+0 38 Oryza sativa Os03g0266600 9631.m01553 - - 1e-1 At5g48090 ELP1 (EDM2-LIKE PROTEIN1) C.G. S.X.
0.01 8e-1 38 Populus trichocarpa PtpAffx.225260.1.S1_at pmrna44483 hypothetical protein - 4e-13 At3g54420 ATEP3 C.G. S.X.
0.01 6e-1 38 Triticum aestivum TaAffx.110233.1.S1_at CA661627 - - 1e+0 At2g46735 unknown protein C.G. S.X.
0.01 7e-1 36 Vitis vinifera 1608076_at CB342524 - - 4e-1 At2g36100 integral membrane family protein C.G. S.X.
0.01 4e+0 34 Zea mays ZmAffx.662.1.A1_at AI734287 - - 1e-1 At4g27750 ISI1 (IMPAIRED SUCROSE INDUCTION 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0042306 Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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