Gene omics information

Query gene ID At5g41740
Gene name disease resistance protein (TIR-NBS-LRR class), putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4558.3At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAS.X.H.G.
0.6781.6At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6781.6At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.S.X.H.G.
0.6579.6At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.S.X.H.G.
0.6579.6At5g52760835353heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PS.X.H.G.
0.6478.9At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6378.1At5g47850834836CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.6378.1At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6277.3At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOS.X.H.G.
0.6176.7At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
338.9100.0E-MEXP-807-raw-cel-1173273144
242.5100.0E-MEXP-807-raw-cel-1173273252
94.499.9GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutants
89.299.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
86.999.9GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
79.299.9GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
71.199.9GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
68.799.9GSM322555genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
68.699.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
66.599.8E-MEXP-98-raw-cel-320188749
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8801659At5g41750834178disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
0.638e-135482At5g41550834157disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.424e-66254At5g40910834092disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.452e-52208At5g41540834156disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
0.063e-1791At4g14370827081phosphoinositide bindingF:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVAC.G.S.X.
0.075e-1687At1g63730842677disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAFC.G.S.X.
0.084e-1067At1g63880842692disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.C.G.S.X.
0.094e-1067At1g63740842678disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-242Glycine maxGma.8706.1.S1_atBU762562--2e-1At2g20142transmembrane receptorC.G.S.X.
0.018e-136Hordeum vulgarerbaal29b24_atrbaal29b24--1e-6At5g15790zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.018e-138Oryza sativaOsAffx.26443.1.S1_s_at---0C.G.S.X.
0.022e-346Populus trichocarpaPtpAffx.224540.1.S1_s_atpmrna43164nls-tir-nbs-lrr resistance protein-1e-2At1g69550disease resistance protein (TIR-NBS class), putativeC.G.S.X.
0.014e-138Triticum aestivumTa.14047.1.S1_atBQ805677--7e-2At2g32090lactoylglutathione lyase family protein / glyoxalase I family proteinC.G.S.X.
0.012e+034Vitis vinifera1618500_atCF403706--8e-1At2g42280basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.013e+034Zea maysZm.16107.1.S1_atAI612310--4e+0At3g18330F-box family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
LGO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
LGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
LGO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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