CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g41460

Gene name fringe-related protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g41460 834147 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
0.25 22.6 At3g57600 824929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
0.15 7.8 At1g65900 842902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPAO S.X. H.G.
0.02 0.4 At1g02180 839543 ferredoxin-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.01 0.2 At3g24150 822001 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
78.6 99.9 E-ATMX-33-raw-cel-1562596197
67.7 99.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.2 99.8 E-ATMX-33-raw-cel-1562596103
61.9 99.8 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
50.6 99.8 E-ATMX-33-raw-cel-1562596081
41.8 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.0 99.7 E-ATMX-33-raw-cel-1562596241
23.8 99.6 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.9 99.5 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 6e-57 222 At4g11350 826737 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.33 2e-47 190 At4g23490 828447 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.09 4e-21 103 At4g00300 828072 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PFMOB C.G. S.X.
0.15 4e-12 73 At1g01570 837183 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PFMO C.G. S.X.
0.07 6e-11 69 At1g07850 837300 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFO C.G. S.X.
0.04 8e-4 46 At2g37730 818350 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.01 1e-2 42 At5g37570 833735 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
0.02 5e-2 40 At4g00905 827986 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-23 109 Glycine max GmaAffx.75252.1.S1_at AI748581 - - 1e-30 At4g23490 fringe-related protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HW01B08u_at HW01B08u - - 2e-1 At5g44540 tapetum-specific protein-related C.G. S.X.
0.02 2e-3 46 Oryza sativa OsAffx.3224.1.S1_at - - - 0 C.G. S.X.
0.11 1e-9 65 Populus trichocarpa PtpAffx.210698.1.S1_at pmrna20978 hypothetical protein - 4e-8 At4g11350 transferase, transferring glycosyl groups C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.66837.1.S1_at CN012844 - - 3e-1 At5g61600 ethylene-responsive element-binding family protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1619261_s_at CB982969 hypothetical protein LOC100250684 - 2e-1 At1g74520 ATHVA22A C.G. S.X.
0.02 3e-1 36 Zea mays Zm.10195.1.A1_at BM349209 - - 5e+0 At4g11350 transferase, transferring glycosyl groups C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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