Gene omics information

Query gene ID At5g41000
Gene name YSL4 (YELLOW STRIPE LIKE 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At5g41000834102YSL4 (YELLOW STRIPE LIKE 4)Arabidopsis thaliana metal-nicotianamine transporter YSL4S.X.H.G.
0.9195.6At4g17350827447phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOS.X.H.G.
0.7788.0At3g53380824506lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.7788.0At5g14070831256ROXY2Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.S.X.H.G.
0.7184.2At1g10330837572pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.7184.2At1g64260842731zinc finger protein-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1532.6100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
317.7100.0GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.299.7GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
23.499.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.199.6GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.899.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.799.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.599.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.599.6GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.790789At3g27020822319YSL6 (YELLOW STRIPE LIKE 6)Arabidopsis thaliana metal-nicotianamine transporter YSL6C.G.S.X.
0.071e-1275At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.031e-346At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1C.G.S.X.
0.064e-344At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5C.G.S.X.
0.032e-242At5g45450834581iron transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFOAVC.G.S.X.
0.016e-240At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.013e-138At4g08480826407MAPKKK9member of MEKK subfamilyC.G.S.X.
0.013e-138At3g15570820797phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PC.G.S.X.
0.033e-138At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.221e-25119Glycine maxGma.4128.1.S1_atBI968698--1e-42At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.048e-652Hordeum vulgareContig10949_atContig10949--4e-6At1g65730YSL7 (YELLOW STRIPE LIKE 7)C.G.S.X.
0.262e-1999Oryza sativaOs04g0390500AK100148.1-Iron-phytosiderophore transporter protein yellowstripe 11e-21At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.442e-76287Populus trichocarpaPtpAffx.201053.1.S1_atpmrna2074oligopeptide transporter OPT family-3e-103At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.155e-1273Triticum aestivumTa.29812.1.S1_atCA597557--2e-11At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.065e-652Vitis vinifera1620492_atCA818735similar to YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter-3e-23At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.153e-1169Zea maysZm.5546.1.A1_atBM079097hypothetical protein LOC100192483-1e-14At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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