CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40890

Gene name ATCLC-A (CHLORIDE CHANNEL A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g40890 834090 ATCLC-A (CHLORIDE CHANNEL A) Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. S.X. H.G.
0.40 50.8 At3g61430 825316 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. S.X. H.G.
0.32 35.7 At1g01620 839235 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. S.X. H.G.
0.32 35.7 At4g23400 828439 PIP1 F:water channel activity;P:transport, response to salt stress;C:plasma membrane, membrane;BPMOFAV S.X. H.G.
0.25 22.6 At3g53420 824510 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev S.X. H.G.
0.11 4.1 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.9 99.6 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
24.8 99.6 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
19.5 99.6 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.2 99.5 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.6 99.4 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
12.7 99.3 GSM131190 AtGen_D-23_2-UL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
12.5 99.3 GSM131175 AtGen_D-7_1-UL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
12.1 99.3 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
12.0 99.3 GSM131185 AtGen_D-18_2-FL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
12.0 99.3 GSM131174 AtGen_D-6_1-AL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 1134 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family C.G. S.X.
0.01 2e-2 42 At1g49130 841336 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO C.G. S.X.
0.01 7e-2 40 At3g24090 821995 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV C.G. S.X.
0.01 7e-2 40 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
0.01 3e-1 38 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. C.G. S.X.
0.01 3e-1 38 At5g66850 836819 MAPKKK5 member of MEKK subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 9e-27 123 Glycine max GmaAffx.9584.1.S1_at BM093687 chloride channel - 2e-27 At5g40890 ATCLC-A (CHLORIDE CHANNEL A) C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.06 4e-8 61 Oryza sativa Os12g0438600 BI812618 - Chloride channel protein CLC-a (AtCLC-a) 3e+0 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein C.G. S.X.
0.33 1e-35 153 Populus trichocarpa PtpAffx.201034.1.S1_at pmrna2029 Cl-channel clc-7 - 8e-36 At5g40890 ATCLC-A (CHLORIDE CHANNEL A) C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.100662.1.S1_at CA744073 - - 3e-3 At5g49890 CLC-C (CHLORIDE CHANNEL C) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1619311_at CB970517 hypothetical LOC100264074 - 3e-5 At5g13910 LEP (LEAFY PETIOLE) C.G. S.X.
0.03 5e-4 46 Zea mays Zm.8903.1.S1_at AY236970.2 Chloride channel - 4e-22 At5g49890 CLC-C (CHLORIDE CHANNEL C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006821 The directed movement of chloride into, out of, within or between cells.
X GO:0015706 The directed movement of nitrate into, out of, within or between cells.
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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