CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40860

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.86 93.1 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. S.X. H.G.
0.82 90.9 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.82 90.9 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.81 90.4 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development S.X. H.G.
0.81 90.4 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.81 90.4 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.81 90.4 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. S.X. H.G.
0.81 90.4 At5g24313 832499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.81 90.4 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
663.5 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
489.0 100.0 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
308.5 100.0 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
307.8 100.0 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
201.0 100.0 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
196.1 100.0 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
115.1 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
85.1 99.9 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
66.7 99.8 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
66.1 99.8 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-13 75 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF C.G. S.X.
0.02 4e-1 36 At5g11000 830967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.01 4e-1 36 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA C.G. S.X.
0.01 4e-1 36 At3g55020 824668 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA C.G. S.X.
0.02 1e+0 34 At5g46840 834728 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 1e+0 34 At5g61260 836247 chromosome scaffold protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 1e+0 34 At5g22630 832326 ADT5 (arogenate dehydratase 5) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. C.G. S.X.
0.02 1e+0 34 At4g36920 829845 AP2 (APETALA 2) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.93243.1.S1_s_at CF808792 - - 3e-1 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig12977_at Contig12977 - - 5e+0 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.03 5e-2 40 Oryza sativa Os08g0338500 AK107751.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-2 At5g40860 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.3235.1.S1_at DN498867 hypothetical protein - 1e+0 At5g40860 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.3704.1.S1_at BJ246716 - - 3e+0 At3g48480 cysteine-type peptidase C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621143_at CA816025 hypothetical protein LOC100243239 - 7e-3 At5g22280 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.6436.1.A1_at AI665672 - - 1e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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