Gene omics information

Query gene ID At5g40840
Gene name SYN2
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g40840834084SYN2Cohesion family protein SYN2 (SYN2).S.X.H.G.
0.6781.6At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.S.X.H.G.
0.124.9At3g20490821595unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPS.X.H.G.
0.020.4At2g31320817690PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)Abiotic Stress-inducible gene.S.X.H.G.
0.020.4At5g44280834451RING1A (RING 1A)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
201.4100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
148.999.9GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
143.099.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.799.9GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-242At3g02500821065unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e-138At4g36420829794ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFC.G.S.X.
0.013e-138At1g15530838123receptor lectin kinase, putativeF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVAC.G.S.X.
0.013e-138At1g54340841875ICDH (ISOCITRATE DEHYDROGENASE)NADP-specific isocitrate dehydrogenase (ICDH)C.G.S.X.
0.011e+036At5g66310836763kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAC.G.S.X.
0.011e+036At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFC.G.S.X.
0.011e+036At5g01130831796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxGmaAffx.4332.1.A1_atBU549681--3e-1At5g07070CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)C.G.S.X.
0.011e-138Hordeum vulgareContig26590_atContig26590--8e-2At5g57120-C.G.S.X.
0.012e+036Oryza sativaOs04g0105300AK101957.1-Protein of unknown function DUF1295 family protein2e-1At4g09530auxin-responsive family proteinC.G.S.X.
0.047e-344Populus trichocarpaPtpAffx.217639.1.S1_s_atpmrna32986hypothetical protein-5e-3At5g40840SYN2C.G.S.X.
0.021e+036Triticum aestivumTaAffx.5172.1.S1_atCA720255--4e+0At2g39170unknown proteinC.G.S.X.
0.019e-238Vitis vinifera1619651_atCA817394hypothetical protein LOC100245160-5e-25At1g29990PDF6 (PREFOLDIN 6)C.G.S.X.
0.012e+034Zea maysZm.5381.1.A1_atBM079410hypothetical protein LOC100191714-2e+0At5g06590unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006302The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
XGO:0007067A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage