Gene omics information

Query gene ID At5g40780
Gene name LHT1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g40780834078LHT1Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.S.X.H.G.
0.5065.3At5g37600833738ATGSR1encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumS.X.H.G.
0.2522.6At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.S.X.H.G.
0.2217.5At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAS.X.H.G.
0.061.4At4g23010828400UDP-galactose transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOABS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
36.499.7E-MEXP-807-raw-cel-1173272832
30.599.7GSM128664Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
28.799.7GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
27.799.7GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
25.899.7GSM142847MG001_ATH1_A28-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
24.799.6GSM128682Underwood_1-35_E.coli-0157-H7-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.499.6GSM128685Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.499.6GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.399.6E-MEXP-807-raw-cel-1173272948
21.999.6GSM128687Underwood_1-40_E.coli-TUV86-2-fliC-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.336e-32139At1g24400839057LHT2 (LYSINE HISTIDINE TRANSPORTER 2)High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthersC.G.S.X.
0.359e-28125At1g48640841286lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAC.G.S.X.
0.152e-25117At1g61270842421lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPOFBAVC.G.S.X.
0.369e-25115At1g67640843088lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity, amine transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAC.G.S.X.
0.088e-1375At1g71680843494amino acid transmembrane transporterF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBVC.G.S.X.
0.121e-861At3g01760821086lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity, amine transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVC.G.S.X.
0.012e-138At3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.132e-20101Glycine maxGmaAffx.42701.1.S1_atBI317008--7e-21At5g40780LHT1C.G.S.X.
0.025e+032Hordeum vulgareHVSMEm0005J13r2_atHVSMEm0005J13r2--3e-4At3g03800SYP131 (SYNTAXIN OF PLANTS 131)C.G.S.X.
0.284e-1997Oryza sativaOs08g0127100AK065217.1-Lysine and histidine specific transporter3e-19At5g40780LHT1C.G.S.X.
0.341e-21105Populus trichocarpaPtpAffx.201013.1.S1_atpmrna1989lysine/histidine transporter-1e-21At5g40780LHT1C.G.S.X.
0.175e-1479Triticum aestivumTa.3869.1.S1_atCA674403--7e-14At5g40780LHT1C.G.S.X.
0.161e-1479Vitis vinifera1617470_s_atBQ797931similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter-6e-11At1g48640lysine and histidine specific transporter, putativeC.G.S.X.
0.078e-1167Zea maysZm.15307.1.A1_atCF014037--2e-11At1g24400LHT2 (LYSINE HISTIDINE TRANSPORTER 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043090The directed movement of amino acids into a cell or organelle.
CGO:0006865The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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