CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40550

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g40550 834053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.47 61.2 At3g18910 821424 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.45 58.3 At2g39090 818495 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP S.X. H.G.
0.44 57.2 At3g60740 825245 TTN1 (TITAN 1) Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. S.X. H.G.
0.44 57.2 At2g27340 817277 - F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBP S.X. H.G.
0.43 55.3 At2g18850 816400 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
0.41 52.4 At2g36740 818246 SWC2 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;OMFBPVA S.X. H.G.
0.40 50.8 At1g33400 840233 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFA S.X. H.G.
0.40 50.8 At1g48380 841258 RHL1 (ROOT HAIRLESS 1) Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A. S.X. H.G.
0.40 50.8 At3g62620 825436 sucrose-phosphatase-related F:unknown;P:biological_process unknown;C:unknown;OMFBPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
527.0 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.6 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.2 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.2 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.9 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.2 99.8 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
37.0 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 3e-153 541 At3g27460 822367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MFPO C.G. S.X.
0.02 3e-2 40 At1g51260 841549 LPAT3 ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] C.G. S.X.
0.02 1e-1 38 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV C.G. S.X.
0.01 1e-1 38 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV C.G. S.X.
0.03 1e-1 38 At3g45240 823660 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro. C.G. S.X.
0.03 1e-1 38 At2g11910 815665 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-16 87 Glycine max GmaAffx.5182.2.S1_at AW186428 - - 4e-15 At3g27460 unknown protein C.G. S.X.
0.09 3e-9 61 Hordeum vulgare Contig6718_s_at Contig6718 - - 1e-8 At5g40550 unknown protein C.G. S.X.
0.09 9e-10 65 Oryza sativa Os.13552.1.S1_at - - - 0 C.G. S.X.
0.41 3e-18 93 Populus trichocarpa Ptp.438.1.S1_at CK317792 hypothetical protein - 2e-18 At5g40550 unknown protein C.G. S.X.
0.07 2e-3 44 Triticum aestivum Ta.9706.1.S1_a_at BQ169555 - - 3e-3 At5g40550 unknown protein C.G. S.X.
0.13 2e-3 42 Vitis vinifera 1614120_at CB349861 - - 4e-3 At5g40550 unknown protein C.G. S.X.
0.09 1e-5 50 Zea mays Zm.18071.1.S1_at CK849985 hypothetical protein LOC100273149 - 5e-5 At5g40550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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