Gene omics information

Query gene ID At5g40510
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g40510834049-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAS.X.H.G.
0.7284.8At5g43350834353PHT1Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.S.X.H.G.
0.6982.9At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.S.X.H.G.
0.6176.7At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.6075.7At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6075.7At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAS.X.H.G.
0.5267.4At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOS.X.H.G.
0.5267.4At5g05400830422disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFAS.X.H.G.
0.4761.2At4g25090828612respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOAS.X.H.G.
0.4558.3At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.499.8GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
43.399.8GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
42.899.8GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
41.899.8GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
40.499.8E-MEXP-828-raw-cel-1156922794
37.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
36.599.7E-MEXP-828-raw-cel-1156922485
34.299.7E-MEXP-828-raw-cel-1156922455
33.799.7E-MEXP-828-raw-cel-1156922750
33.699.7GSM231196wild-type at T0.5, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.363e-33143At3g27570822379-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FBPOAC.G.S.X.
0.042e-344At5g55900835688sucrase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPOBAC.G.S.X.
0.028e-342At4g26620828769sucrase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAC.G.S.X.
0.021e-138At1g12830837839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.025e-136At5g45020834533-F:unknown;P:unknown;C:cellular_component unknown;BOFPMAC.G.S.X.
0.025e-136At2g16800816181high-affinity nickel-transport family proteinF:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPAC.G.S.X.
0.012e+034At5g37830833761OXP1 (OXOPROLINASE 1)Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.C.G.S.X.
0.022e+034At5g41910834196RNA polymerase II mediator complex protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.012e+034At5g16750831538TOZ (TORMOZEMBRYO DEFECTIVE)Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.115e-859Glycine maxGma.10749.1.S1_atAW349258--3e-8At5g40510-C.G.S.X.
0.041e-240Hordeum vulgareContig3710_atContig3710--1e-3At4g26620sucrase-relatedC.G.S.X.
0.066e-240Oryza sativaOs02g0725100AK071759.1-Sucraseferredoxin-like family protein4e-9At4g26620sucrase-relatedC.G.S.X.
0.072e-448Populus trichocarpaPtpAffx.107185.1.A1_atCV261240hypothetical protein-2e-4At5g40510-C.G.S.X.
0.053e-240Triticum aestivumTaAffx.110653.1.S1_atCA656539--1e-2At5g40510-C.G.S.X.
0.041e-1169Vitis vinifera1614476_atCA817723hypothetical protein LOC100261102-9e-19At3g27570-C.G.S.X.
0.038e-134Zea maysZm.15889.1.A1_atCK986089hypothetical protein LOC100280322-2e-12At3g51130unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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