Gene omics information

Query gene ID At5g40470
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g40470834045-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFBS.X.H.G.
0.2930.3At1g22040838809kelch repeat-containing F-box family proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;MPBOVFAS.X.H.G.
0.2014.4At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.S.X.H.G.
0.1912.7At4g21350827885PUB8 (PLANT U-BOX 8)Encodes a U-box/ARM repeat protein required fore self-incompatibility.S.X.H.G.
0.1710.2At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
200.6100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
101.099.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
100.999.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.099.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.099.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.499.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.899.6GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
22.899.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.999.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.599.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-240At1g28680839768transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.012e-138At5g47980834849transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFBC.G.S.X.
0.012e-138At3g02875821199ILR1 (IAA-LEUCINE RESISTANT 1)Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.C.G.S.X.
0.022e-138At1g805608443953-isopropylmalate dehydrogenase, chloroplast, putativeThe AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.C.G.S.X.
0.017e-136At5g54830835573DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing proteinF:dopamine beta-monooxygenase activity, monooxygenase activity;P:histidine catabolic process, metabolic process;C:endomembrane system;MPBFOAC.G.S.X.
0.017e-136At5g66900836824disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAVC.G.S.X.
0.017e-136At4g30420829165nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAMC.G.S.X.
0.017e-136At3g04650819623oxidoreductaseF:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMFC.G.S.X.
0.017e-136At1g10680837611PGP10 (P-GLYCOPROTEIN 10)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:mitochondrion;BOMAFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGma.14563.1.S1_s_atCD399224--8e-2At5g40470-C.G.S.X.
0.024e-136Hordeum vulgareHU05C09u_s_atHU05C09u--5e-2At5g55620unknown proteinC.G.S.X.
0.014e-138Oryza sativaOs04g0623400AK100249.1-Exonuclease domain containing protein2e-1At5g40470-C.G.S.X.
0.023e-138Populus trichocarpaPtpAffx.156703.1.S1_atCX170072hypothetical protein-8e-3At1g58180carbonic anhydrase family protein / carbonate dehydratase family proteinC.G.S.X.
0.023e+034Triticum aestivumTaAffx.107589.2.S1_x_atCA697650--4e+0At5g07475plastocyanin-like domain-containing proteinC.G.S.X.
0.026e-238Vitis vinifera1615640_atCF201222.1--1e+0At5g38317LCR58 (Low-molecular-weight cysteine-rich 58)C.G.S.X.
0.013e-136Zea maysZm.6950.1.A1_atCO534341PP7-9e-4At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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