CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40350

Gene name MYB24 (myb domain protein 24)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g40350 834033 MYB24 (myb domain protein 24) Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. S.X. H.G.
0.55 70.6 At1g09155 837435 AtPP2-B15 (Phloem protein 2-B15) F:carbohydrate binding;P:unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At3g14380 820659 integral membrane family protein F:unknown;P:unknown;C:membrane;P S.X. H.G.
0.33 38.1 At3g55870 824753 anthranilate synthase, alpha subunit, putative F:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPM S.X. H.G.
0.28 30.3 At1g61680 842465 TPS14 (TERPENE SYNTHASE 14) F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
353.3 100.0 E-MEXP-1474-raw-cel-1593932705
340.5 100.0 E-MEXP-1474-raw-cel-1593932513
298.3 100.0 GSM106915 opr3_JA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
292.7 100.0 E-MEXP-1474-raw-cel-1593932609
210.4 100.0 E-MEXP-1474-raw-cel-1593932673
198.5 100.0 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
192.5 100.0 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
165.3 100.0 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
140.6 99.9 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
129.9 99.9 E-MEXP-1474-raw-cel-1593932481
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.41 3e-81 301 At3g27810 822401 ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21) Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. C.G. S.X.
0.40 1e-37 157 At3g01530 821113 AtMYB57 (myb domain protein 57) Member of the R2R3 factor gene family. C.G. S.X.
0.23 7e-24 111 At3g27809 6240421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.07 6e-12 71 At1g25340 839118 MYB116 (myb domain protein 116) putative transcription factor (MYB116) C.G. S.X.
0.09 9e-11 67 At4g13480 826980 AtMYB79 (myb domain protein 79) Member of the R2R3 factor gene family. C.G. S.X.
0.09 9e-11 67 At1g48000 841218 MYB112 (myb domain protein 112) Encodes a putative transcription factor (MYB112). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-38 161 Glycine max Gma.782.3.S1_a_at BE807621 MYB transcription factor MYB98 - 5e-39 At5g40350 MYB24 (myb domain protein 24) C.G. S.X.
0.04 2e-7 56 Hordeum vulgare Contig18020_at Contig18020 - - 1e-8 At3g01530 AtMYB57 (myb domain protein 57) C.G. S.X.
0.07 2e-7 57 Oryza sativa Os05g0568200 9633.m04622 - Typical P-type R2R3 Myb protein (Fragment) 6e-6 At3g01530 AtMYB57 (myb domain protein 57) C.G. S.X.
0.44 3e-39 163 Populus trichocarpa PtpAffx.200964.1.S1_at pmrna1885 hypothetical protein - 2e-39 At5g40350 MYB24 (myb domain protein 24) C.G. S.X.
0.04 4e-7 56 Triticum aestivum Ta.27429.1.S1_at BT009018.1 - - 1e-8 At3g01530 AtMYB57 (myb domain protein 57) C.G. S.X.
0.26 3e-29 127 Vitis vinifera 1606690_at CD797991 R2R3 Myb24 transcription factor - 1e-28 At5g40350 MYB24 (myb domain protein 24) C.G. S.X.
0.04 9e-6 50 Zea mays Zm.13870.1.S1_at AY237128.1 myb-related protein c1-I-2K1 - 4e-4 At5g35550 TT2 (TRANSPARENT TESTA 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0048443 The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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