CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40340

Gene name PWWP domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA S.X. H.G.
0.69 82.9 At5g47690 834820 binding F:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVA S.X. H.G.
0.61 76.7 At3g54230 824590 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOFPBAV S.X. H.G.
0.59 74.7 At5g44180 834441 homeobox transcription factor, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVA S.X. H.G.
0.59 74.7 At5g55660 835660 - F:unknown;P:unknown;C:mitochondrion;MOFBPVA S.X. H.G.
0.56 73.0 At5g04290 830308 KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1) F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA S.X. H.G.
0.55 70.6 At1g31870 840077 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFPBVA S.X. H.G.
0.53 68.6 At2g35530 818118 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent, transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MOPFBVA S.X. H.G.
0.49 63.5 At2g06210 815177 ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. S.X. H.G.
0.48 62.5 At1g18950 838476 aminoacyl-tRNA synthetase family F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.6 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
92.6 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
78.0 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
75.5 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
75.2 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.2 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
66.4 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.0 99.8 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
58.9 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 2e-21 105 At3g27860 822406 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFB C.G. S.X.
0.01 1e-1 40 At4g25320 828635 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 1e-1 40 At4g12050 826813 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.01 1e-1 40 At4g32610 829396 unknown protein F:unknown;P:unknown;C:mitochondrial matrix;MOFBPVA C.G. S.X.
0.01 1e-1 40 At3g05430 819708 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 1e-1 40 At1g03940 839366 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 1e-1 40 At1g04590 839484 - F:molecular_function unknown;P:unknown;C:unknown;PO C.G. S.X.
0.01 1e-1 40 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-3 44 Glycine max GmaAffx.64275.1.A1_at BI969811 - - 3e+0 At5g37610 voltage-gated anion channel C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig15498_at Contig15498 - - 1e+0 At4g28485 unknown protein C.G. S.X.
0.01 8e-1 38 Oryza sativa Os01g0796500 CA766130 - HAD-superfamily, subfamily IIIA phosphatase domaincontaining protein 8e-1 At3g22090 unknown protein C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.92531.1.S1_at DN500436 - - 7e-5 At3g06150 unknown protein C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.7426.1.S1_at CA659316 - - 3e+0 At3g54390 transcription factor C.G. S.X.
0.01 2e-3 44 Vitis vinifera 1611207_at CF405093 - - 2e-1 Atcg00070 - C.G. S.X.
0.01 4e-2 40 Zea mays Zm.3632.1.S1_at CF627896 KED-like protein /// cylicin-1 - 2e-1 At3g05060 SAR DNA-binding protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage