Gene omics information

Query gene ID At5g40250
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g40250834023zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.3643.6At2g35330818100protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAVS.X.H.G.
0.3133.8At1g03280838581transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family proteinF:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:endomembrane system, transcription factor TFIIE complex;MFOPVBAS.X.H.G.
0.2726.2At3g54010824568PAS1 (PASTICCINO 1)Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.S.X.H.G.
0.2522.6At5g26600832730catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:chloroplast;BOFAPMVS.X.H.G.
0.2522.6At5g60570836178kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAFS.X.H.G.
0.2319.3At5g09410830800EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)S.X.H.G.
0.2319.3At1g61040842395VIP5 (vernalization independence 5)Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.S.X.H.G.
0.2115.8At1g26830839226ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.S.X.H.G.
0.2014.4At1g59650842255CW14Encodes CW14.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.799.8GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
34.999.7GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
32.599.7GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
30.799.7GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.499.7E-MEXP-285-raw-cel-440783213
26.899.7GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
22.599.6GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
21.899.6GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
21.299.6E-ATMX-33-raw-cel-1562596197
18.999.5GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.254e-1479At1g23980839010zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.131e-757At4g30400829163zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.052e-344At4g33565829496protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:plasma membrane;PMOFVBC.G.S.X.
0.012e-344At2g16250816121leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, plant-type cell wall;PMOBFVAC.G.S.X.
0.019e-342At5g41170834119pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.029e-342At5g22560832319unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POVMBFC.G.S.X.
0.039e-342At4g14805827136protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMFOC.G.S.X.
0.029e-342At3g11030820274unknown proteinF:unknown;P:unknown;C:unknown;MPOBFVAC.G.S.X.
0.039e-342At1g23040838912hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-240Glycine maxGmaAffx.14519.1.S1_atBM524200--8e-1At1g75540STH2 (SALT TOLERANCE HOMOLOG2)C.G.S.X.
0.031e-344Hordeum vulgareContig12427_atContig12427--5e-1At1g12140FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5)C.G.S.X.
0.072e-242Oryza sativaOs02g07431009630.m04993-Zn-finger, RING domain containing protein1e-2At5g40250zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.272e-1687Populus trichocarpaPtpAffx.213874.1.S1_s_atpmrna27060hypothetical protein-1e-16At5g40250zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.041e-138Triticum aestivumTaAffx.6283.1.S1_atCA688902--3e+0At2g05635ATP binding / ATP-dependent DNA helicase/ DNA bindingC.G.S.X.
0.054e-548Vitis vinifera1622429_atCF204998.1hypothetical protein LOC100250803-1e-4At5g40250zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e-240Zea maysZm.17055.1.S1_atCF972499--2e-2At1g12665-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage