CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g40020

Gene name pathogenesis-related thaumatin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO S.X. H.G.
0.60 75.7 At1g08340 837354 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA S.X. H.G.
0.57 73.8 At3g62020 825375 GLP10 (GERMIN-LIKE PROTEIN 10) germin-like protein (GLP10) S.X. H.G.
0.40 50.8 At2g37090 818285 IRX9 (IRREGULAR XYLEM 9) The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis. S.X. H.G.
0.40 50.8 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
349.8 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
337.9 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
222.6 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
208.1 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
181.2 100.0 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
130.9 99.9 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
117.1 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
97.8 99.9 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
94.4 99.9 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
92.1 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 3e-5 50 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV C.G. S.X.
0.03 2e-3 44 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase C.G. S.X.
0.02 2e-2 40 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P C.G. S.X.
0.01 1e-1 38 At3g14172 5007999 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.04 1e-1 38 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. C.G. S.X.
0.01 2e+0 34 At5g38730 833864 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 2e+0 34 At5g46000 834640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g52630 835340 MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. C.G. S.X.
0.01 2e+0 34 At2g40850 818683 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:cellular_component unknown;PMOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.6036.2.S1_at BM954176 - - 1e+0 At5g40020 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV_CEb0006C16r2_at HV_CEb0006C16r2 - - 1e+1 At5g64680 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa OsAffx.16007.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.205520.1.S1_at pmrna10911 hypothetical protein - 2e-11 At1g77700 pathogenesis-related thaumatin family protein C.G. S.X.
0.04 6e+0 32 Triticum aestivum TaAffx.22913.1.S1_at CA743329 - - 8e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1606848_at CB976893 - - 2e+0 At5g40020 pathogenesis-related thaumatin family protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.15668.1.S1_at CD438122 - - 7e-1 At3g53670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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