CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39970

Gene name catalytic

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.11 4.1 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF S.X. H.G.
0.43 55.3 At1g50520 841474 CYP705A27 member of CYP705A S.X. H.G.
0.36 43.6 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.30 32.1 At3g20960 821646 CYP705A33 member of CYP705A S.X. H.G.
0.19 12.7 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.4 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
72.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.9 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.9 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.7 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 2e-11 71 At1g74790 843818 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF C.G. S.X.
0.13 5e-9 63 At5g62630 836384 HIPL2 (HIPL2 PROTEIN PRECURSOR) F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAF C.G. S.X.
0.01 7e-2 40 At1g35890 840491 DNA binding F:DNA binding;P:regulation of transcription;C:cellular_component unknown;PO C.G. S.X.
0.01 3e-1 38 At4g03180 828047 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA C.G. S.X.
0.01 3e-1 38 At3g11250 820296 60S acidic ribosomal protein P0 (RPP0C) F:structural constituent of ribosome;P:translational elongation, response to salt stress, translation;C:cytosolic ribosome, ribosome, membrane;MOFAPB C.G. S.X.
0.01 3e-1 38 At3g09200 820076 60S acidic ribosomal protein P0 (RPP0B) F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPB C.G. S.X.
0.01 3e-1 38 At2g03140 814843 CAAX amino terminal protease family protein F:unknown;P:proteolysis;C:nucleus;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-19 97 Glycine max Gma.6006.1.S1_at BQ610956 - - 7e-16 At1g74790 catalytic C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig19960_s_at Contig19960 ENOD40-like protein - 2e-1 At1g75980 - C.G. S.X.
0.04 1e-4 50 Oryza sativa Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic C.G. S.X.
0.19 3e-11 71 Populus trichocarpa PtpAffx.213898.1.S1_at pmrna27100 hypothetical protein - 2e-11 At5g39970 catalytic C.G. S.X.
0.06 7e-5 50 Triticum aestivum Ta.5666.1.S1_at CA644554 - - 3e-5 At5g39970 catalytic C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1619747_at CF372623 hypothetical protein LOC100247254 - 7e-5 At2g22080 unknown protein C.G. S.X.
0.01 3e+1 30 Zea mays ZmAffx.477.1.A1_at AI677582 - - 8e-1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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