CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39890

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.96 97.3 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.96 97.3 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.96 97.3 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
0.85 92.4 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF S.X. H.G.
0.85 92.4 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.82 90.9 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV S.X. H.G.
0.76 87.4 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.8 99.9 GSM245469 9 hr Hypoxia Stress Total RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
100.1 99.9 GSM245479 9 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
91.4 99.9 GSM245467 2 hr Hypoxia Stress Total RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
88.1 99.9 GSM245472 2 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
84.6 99.9 GSM40553 Total RNA - hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
76.7 99.9 GSM245492 2 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
72.6 99.9 GSM40555 Polysomal mRNA - Hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
65.7 99.8 GSM245489 9 hr Hypoxia Stress Total RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
62.5 99.8 GSM206277 Wild type, water treatment, biological rep1 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
62.3 99.8 GSM245484 9 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 2e-18 93 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.02 1e-1 38 At1g71360 843477 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPAV C.G. S.X.
0.01 4e-1 36 At4g15236 827189 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:membrane;BOMAFPV C.G. S.X.
0.02 4e-1 36 At3g12970 820483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
0.03 4e-1 36 At3g44380 823563 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.00 2e+0 34 At5g23110 832375 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
0.04 2e+0 34 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.02 2e+0 34 At5g39785 833974 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 4e-11 69 Glycine max GmaAffx.79189.1.S1_at BF596987 - - 2e-11 At5g39890 unknown protein C.G. S.X.
0.03 5e-2 38 Hordeum vulgare Contig25564_at Contig25564 - - 7e-1 At3g30220 unknown protein C.G. S.X.
0.13 2e-1 38 Oryza sativa Os01g0185500 NM_189612.1 - RmlC-like cupin family protein 9e-2 At5g39890 unknown protein C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.61378.1.S1_at BP935892 hypothetical protein - 1e-1 At3g58670 unknown protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.20702.1.S1_at CA649752 - - 1e-1 At5g39890 unknown protein C.G. S.X.
0.03 2e-3 42 Vitis vinifera 1610901_at BQ799025 hypothetical protein LOC100266451 - 1e-19 At5g15120 unknown protein C.G. S.X.
0.04 4e-2 38 Zea mays Zm.2477.1.A1_at BM347825 hypothetical protein LOC100191278 - 3e-9 At5g15120 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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