CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39830

Gene name DEG8

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g39830 833979 DEG8 Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II. S.X. H.G.
0.63 78.1 At3g24590 822055 PLSP1 (plastidic type I signal peptidase 1) Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33). S.X. H.G.
0.63 78.1 At4g24090 828509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMA S.X. H.G.
0.60 75.7 At5g14660 831318 PDF1B (PEPTIDE DEFORMYLASE 1B) encodes a peptide deformylase-like protein S.X. H.G.
0.38 46.7 At5g11450 831016 oxygen-evolving complex-related F:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PB S.X. H.G.
0.36 43.6 At2g42130 818813 unknown protein F:unknown;P:biological_process unknown;C:thylakoid, chloroplast, plastoglobule;PO S.X. H.G.
0.27 26.2 At1g22700 838876 tetratricopeptide repeat (TPR)-containing protein Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.2 E-TABM-61-raw-cel-683343592
10.7 99.2 E-ATMX-26-raw-cel-1441077115
10.6 99.2 E-TABM-60-raw-cel-680980214
10.2 99.2 E-ATMX-26-raw-cel-1441077073
9.6 99.1 GSM134362 St.Clair_1-23_363_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
9.2 99.1 GSM134446 St.Clair_1-71_315_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
9.1 99.1 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
9.1 99.1 GSM134364 St.Clair_1-25_345_Cvi-1_0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
8.8 99.0 E-TABM-18-raw-cel-489543413
8.8 99.0 GSM134365 St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At2g46520 819263 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative F:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOP C.G. S.X.
0.02 4e-2 40 At1g77890 844125 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.02 2e-1 38 At1g49820 841405 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) encodes 5-methylthioribose kinase, involved in methionine cycle C.G. S.X.
0.03 7e-1 36 At3g27925 822416 DEGP1 (DegP protease 1) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. C.G. S.X.
0.01 7e-1 36 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV C.G. S.X.
0.01 3e+0 34 At4g33920 829536 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV C.G. S.X.
0.01 3e+0 34 At4g02480 827979 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-2 40 Glycine max Gma.2408.1.S1_at CD405172 - - 4e-101 At3g27925 DEGP1 (DegP protease 1) C.G. S.X.
0.05 3e-4 46 Hordeum vulgare Contig8967_at Contig8967 - - 8e-62 At3g27925 DEGP1 (DegP protease 1) C.G. S.X.
0.28 4e-41 171 Oryza sativa Os04g0459900 AK065850.1 - Conserved hypothetical protein 2e-41 At5g39830 DEG8 C.G. S.X.
0.17 2e-29 131 Populus trichocarpa PtpAffx.52805.1.A1_at CV233973 hypothetical protein - 1e-29 At5g39830 DEG8 C.G. S.X.
0.14 8e-13 75 Triticum aestivum Ta.5462.1.S1_at BJ285991 - - 9e-13 At5g39830 DEG8 C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622889_at CF568947 - - 1e+0 At3g56020 60S ribosomal protein L41 (RPL41G) C.G. S.X.
0.05 3e-7 56 Zea mays Zm.18435.1.A1_at CO529704 hypothetical protein LOC100272554 - 4e-7 At5g39830 DEG8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
X GO:0010206 Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the Photosystem II following photoinhibition.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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