Gene omics information

Query gene ID At5g39830
Gene name DEG8
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g39830833979DEG8Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.S.X.H.G.
0.6378.1At3g24590822055PLSP1 (plastidic type I signal peptidase 1)Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).S.X.H.G.
0.6378.1At4g24090828509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMAS.X.H.G.
0.6075.7At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinS.X.H.G.
0.3846.7At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBS.X.H.G.
0.3643.6At2g42130818813unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, chloroplast, plastoglobule;POS.X.H.G.
0.2726.2At1g22700838876tetratricopeptide repeat (TPR)-containing proteinEncodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.699.1GSM134362St.Clair_1-23_363_Cvi-1_0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
9.299.1GSM134446St.Clair_1-71_315_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5757Expression Level Polymorphism Project (ELP) - Kin-0
9.199.1GSM134370St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
9.199.1GSM134364St.Clair_1-25_345_Cvi-1_0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
8.899.0GSM134365St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At2g46520819263cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putativeF:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOPC.G.S.X.
0.024e-240At1g77890844125unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFC.G.S.X.
0.022e-138At1g49820841405ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)encodes 5-methylthioribose kinase, involved in methionine cycleC.G.S.X.
0.037e-136At3g27925822416DEGP1 (DegP protease 1)Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.C.G.S.X.
0.017e-136At3g55580824723regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
0.013e+034At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVC.G.S.X.
0.013e+034At4g02480827979AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-240Glycine maxGma.2408.1.S1_atCD405172--4e-101At3g27925DEGP1 (DegP protease 1)C.G.S.X.
0.053e-446Hordeum vulgareContig8967_atContig8967--8e-62At3g27925DEGP1 (DegP protease 1)C.G.S.X.
0.284e-41171Oryza sativaOs04g0459900AK065850.1-Conserved hypothetical protein2e-41At5g39830DEG8C.G.S.X.
0.172e-29131Populus trichocarpaPtpAffx.52805.1.A1_atCV233973hypothetical protein-1e-29At5g39830DEG8C.G.S.X.
0.148e-1375Triticum aestivumTa.5462.1.S1_atBJ285991--9e-13At5g39830DEG8C.G.S.X.
0.021e+130Vitis vinifera1622889_atCF568947--1e+0At3g5602060S ribosomal protein L41 (RPL41G)C.G.S.X.
0.053e-756Zea maysZm.18435.1.A1_atCO529704hypothetical protein LOC100272554-4e-7At5g39830DEG8C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
XGO:0010206Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the Photosystem II following photoinhibition.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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