Gene omics information

Query gene ID At5g39785
Gene name structural constituent of ribosome
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g39785833974structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVS.X.H.G.
0.4355.3At4g29790829101unknown proteinF:molecular_function unknown;P:unknown;C:unknown;OMPFBVS.X.H.G.
0.3643.6At1g59820842275ALA3 (Aminophospholipid ATPase3)Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower.S.X.H.G.
0.3235.7At1g71800843510cleavage stimulation factor, putativeF:protein binding, RNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAS.X.H.G.
0.3032.1At1g13350837895protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOFPBVAS.X.H.G.
0.2217.5At4g34370829587ARI1 (ARIADNE)F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVS.X.H.G.
0.135.8At2g32760817836unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
138.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
45.299.8GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
39.799.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
35.599.7GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-240At2g22560816788-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVC.G.S.X.
0.022e-138At5g48950834953thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPC.G.S.X.
0.012e-138At5g58530835966glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBFC.G.S.X.
0.012e-138At4g39870830146-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.012e-138At4g32820829418bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOPBAFC.G.S.X.
0.012e-138At4g25750828680ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVC.G.S.X.
0.012e-138At3g54480824613SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)Encodes an SKP1 interacting partner (SKIP5).C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.60693.1.S1_atBM525641--2e-5At3g05040HST (HASTY)C.G.S.X.
0.021e-138Hordeum vulgareHVSMEc0001C18f2_s_atHVSMEc0001C18f2--7e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)C.G.S.X.
Os07g04787000.022e+0Oryza sativaOs04g05044009635.m02880--2e-1At1g78030-C.G.S.X.
0.059e-1169Populus trichocarpaPtpAffx.213931.1.S1_atpmrna27161hypothetical protein-6e-11At5g39785structural constituent of ribosomeC.G.S.X.
0.024e+034Triticum aestivumTaAffx.98061.1.S1_atBG607189--3e-1At1g66140ZFP4 (ZINC FINGER PROTEIN 4)C.G.S.X.
0.023e-136Vitis vinifera1613989_atCF414043--7e-1At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)C.G.S.X.
0.016e+032Zea maysZm.9799.1.A1_atAY111917.1hypothetical protein LOC100217145-1e+0At4g34870ROC5 (ROTAMASE CYCLOPHILIN 5)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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