CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39785

Gene name structural constituent of ribosome

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g39785 833974 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV S.X. H.G.
0.43 55.3 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV S.X. H.G.
0.36 43.6 At1g59820 842275 ALA3 (Aminophospholipid ATPase3) Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. S.X. H.G.
0.32 35.7 At1g71800 843510 cleavage stimulation factor, putative F:protein binding, RNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA S.X. H.G.
0.30 32.1 At1g13350 837895 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOFPBVA S.X. H.G.
0.22 17.5 At4g34370 829587 ARI1 (ARIADNE) F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.13 5.8 At2g32760 817836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.2 99.8 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
42.2 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.7 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
37.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.5 99.7 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 2e-1 38 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP C.G. S.X.
0.01 2e-1 38 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF C.G. S.X.
0.01 2e-1 38 At4g39870 830146 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 2e-1 38 At4g32820 829418 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOPBAF C.G. S.X.
0.01 2e-1 38 At4g25750 828680 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV C.G. S.X.
0.01 2e-1 38 At3g54480 824613 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) Encodes an SKP1 interacting partner (SKIP5). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.60693.1.S1_at BM525641 - - 2e-5 At3g05040 HST (HASTY) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HVSMEc0001C18f2_s_at HVSMEc0001C18f2 - - 7e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
Os07g0478700 0.02 2e+0 Oryza sativa Os04g0504400 9635.m02880 - - 2e-1 At1g78030 - C.G. S.X.
0.05 9e-11 69 Populus trichocarpa PtpAffx.213931.1.S1_at pmrna27161 hypothetical protein - 6e-11 At5g39785 structural constituent of ribosome C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.98061.1.S1_at BG607189 - - 3e-1 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1613989_at CF414043 - - 7e-1 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.01 6e+0 32 Zea mays Zm.9799.1.A1_at AY111917.1 hypothetical protein LOC100217145 - 1e+0 At4g34870 ROC5 (ROTAMASE CYCLOPHILIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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