Gene omics information

Query gene ID At5g39710
Gene name EMB2745 (EMBRYO DEFECTIVE 2745)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g39710833967EMB2745 (EMBRYO DEFECTIVE 2745)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAS.X.H.G.
0.2217.5At4g39530830107pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.146.8At2g41080818707pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.135.8At5g54880835579DTW domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMPOS.X.H.G.
0.135.8At3g46610823814pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
156.899.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.299.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.799.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
138.499.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
132.199.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
131.099.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
128.599.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.699.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
119.399.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.299.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-757At1g09820837514pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.027e-550At3g53700824537MEE40 (maternal effect embryo arrest 40)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAC.G.S.X.
0.015e-344At2g41720818771EMB2654 (EMBRYO DEFECTIVE 2654)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAC.G.S.X.
0.012e-242At3g46790823832CRR2 (CHLORORESPIRATORY REDUCTION 2)Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.C.G.S.X.
0.012e-242At3g48810824042pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAC.G.S.X.
0.012e-242At2g16880816189pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.012e-242At1g05670837074UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOFBVAC.G.S.X.
0.017e-240At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-448Glycine maxGmaAffx.66049.1.S1_atAW507532--2e-14At2g37230pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.012e+034Hordeum vulgareHVSMEm0009E22r2_x_atHVSMEm0009E22r2--5e+0At5g13720-C.G.S.X.
0.011e-140Oryza sativaOs08g0248300AK108719.1--6e-1At4g18660unknown proteinC.G.S.X.
0.203e-26121Populus trichocarpaPtpAffx.204657.1.S1_atpmrna9160hypothetical protein-2e-26At5g39710EMB2745 (EMBRYO DEFECTIVE 2745)C.G.S.X.
0.013e-138Triticum aestivumTa.3284.1.S1_atBJ209632--7e-1At1g24060unknown proteinC.G.S.X.
0.021e+034Vitis vinifera1616894_atCF514988hypothetical protein LOC100266493-2e+0At5g52965unknown proteinC.G.S.X.
0.012e+034Zea maysZm.10206.1.A1_atBM334670hypothetical protein LOC100194301-7e-15At4g15930microtubule motorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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