Gene omics information

Query gene ID At5g39670
Gene name calcium-binding EF hand family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.6781.6At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOS.X.H.G.
0.6075.7At3g09020820054alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinF:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOBS.X.H.G.
0.5570.6At2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.S.X.H.G.
0.4862.5At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFS.X.H.G.
0.4659.8At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.S.X.H.G.
0.4659.8At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.3032.1At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
71.499.9E-MEXP-807-raw-cel-1173273144
62.899.8E-MEXP-807-raw-cel-1173273116
61.599.8E-MEXP-807-raw-cel-1173273196
53.599.8E-MEXP-807-raw-cel-1173273088
53.499.8E-MEXP-807-raw-cel-1173273252
51.699.8E-MEXP-807-raw-cel-1173273170
50.799.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
48.999.8GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
48.799.8E-MEXP-509-raw-cel-829148666
46.299.8GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.402e-1893At3g29000822540calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOFPBVC.G.S.X.
0.018e-238At4g30160829139VLN4 (ARABIDOPSIS THALIANA VILLIN 4)Arabidopsis thaliana VILLIN4C.G.S.X.
0.038e-238At4g13690827003unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.028e-238At3g14680820696CYP72A14putative cytochrome P450C.G.S.X.
0.028e-238At3g43590823456zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:unknown;C:unknown;VMOFPBC.G.S.X.
0.028e-238At3g14640820692CYP72A10putative cytochrome P450C.G.S.X.
0.018e-238At1g582272745835bindingF:binding;P:biological_process unknown;C:chloroplast;MOPFC.G.S.X.
0.018e-238At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-1273Glycine maxGmaAffx.78968.2.S1_atBM188587--9e-13At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.042e-342Hordeum vulgareHVSMEb0011J07r2_atHVSMEb0011J07r2--4e-3At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.042e+034Oryza sativaOs03g0556900NM_184707.1-Conserved hypothetical protein3e+0At3g45000VPS24.2C.G.S.X.
0.092e-654Populus trichocarpaPtpAffx.207860.1.S1_atpmrna15606hypothetical protein-1e-6At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.22849.1.S1_atCA744235--5e-1At3g30383-C.G.S.X.
0.032e-238Vitis vinifera1611223_atCA817112hypothetical protein LOC100245811-2e-6At4g12860UNE14 (unfertilized embryo sac 14)C.G.S.X.
0.038e+030Zea maysZmAffx.365.1.A1_atAI673842--1e+1At5g39580peroxidase, putativeC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage