Gene omics information

Query gene ID At5g39670
Gene name calcium-binding EF hand family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.6781.6At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOS.X.H.G.
0.6075.7At3g09020820054alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinF:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOBS.X.H.G.
0.5570.6At2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.S.X.H.G.
0.4862.5At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFS.X.H.G.
0.4659.8At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.S.X.H.G.
0.4659.8At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.3032.1At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.799.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
48.999.8GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
46.299.8GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.402e-1893At3g29000822540calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOFPBVC.G.S.X.
0.018e-238At4g30160829139VLN4 (ARABIDOPSIS THALIANA VILLIN 4)Arabidopsis thaliana VILLIN4C.G.S.X.
0.038e-238At4g13690827003unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.028e-238At3g14680820696CYP72A14putative cytochrome P450C.G.S.X.
0.028e-238At3g43590823456zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:unknown;C:unknown;VMOFPBC.G.S.X.
0.028e-238At3g14640820692CYP72A10putative cytochrome P450C.G.S.X.
0.018e-238At1g582272745835bindingF:binding;P:biological_process unknown;C:chloroplast;MOPFC.G.S.X.
0.018e-238At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-1273Glycine maxGmaAffx.78968.2.S1_atBM188587--9e-13At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.042e-342Hordeum vulgareHVSMEb0011J07r2_atHVSMEb0011J07r2--4e-3At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.042e+034Oryza sativaOs03g0556900NM_184707.1-Conserved hypothetical protein3e+0At3g45000VPS24.2C.G.S.X.
0.092e-654Populus trichocarpaPtpAffx.207860.1.S1_atpmrna15606hypothetical protein-1e-6At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.22849.1.S1_atCA744235--5e-1At3g30383-C.G.S.X.
0.032e-238Vitis vinifera1611223_atCA817112hypothetical protein LOC100245811-2e-6At4g12860UNE14 (unfertilized embryo sac 14)C.G.S.X.
0.038e+030Zea maysZmAffx.365.1.A1_atAI673842--1e+1At5g39580peroxidase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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