Gene omics information

Query gene ID At5g39630
Gene name vesicle transport v-SNARE family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At5g39630833959vesicle transport v-SNARE family proteinF:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAVS.X.H.G.
0.5065.3At2g14830815971unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVS.X.H.G.
0.5065.3At3g58390825008eukaryotic release factor 1 family protein / eRF1 family proteinF:translation release factor activity;P:translational termination, translation;C:nucleus;OAMFPVS.X.H.G.
0.4050.8At1g51900841617unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVAS.X.H.G.
0.3846.7At1g47885841205leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:cellular_component unknown;POBS.X.H.G.
0.3846.7At2g28170817363ATCHX7member of Putative Na+/H+ antiporter familyS.X.H.G.
0.2522.6At4g31960829326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
402.7100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
319.0100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
275.0100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
268.3100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
260.4100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.0100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
251.6100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
249.0100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
247.4100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
247.1100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.183e-756At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.C.G.S.X.
0.135e-652At3g29100822557VTI13Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.C.G.S.X.
0.022e-240At5g43270834345SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, theC.G.S.X.
0.033e-136At5g41050834107unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.023e-136At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.C.G.S.X.
0.013e-136At3g62700825444ATMRP10member of MRP subfamilyC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-136Glycine maxGmaAffx.81798.1.S1_atBG508815--3e-1At5g39630vesicle transport v-SNARE family proteinC.G.S.X.
0.032e+032Hordeum vulgareHVSMEg0011A19r2_atHVSMEg0011A19r2--3e+0At5g39630vesicle transport v-SNARE family proteinC.G.S.X.
0.036e-136Oryza sativaOsAffx.693.2.S1_at---0C.G.S.X.
0.044e-136Populus trichocarpaPtpAffx.53522.1.S1_atCV238463hypothetical protein-5e+0At2g45820DNA-binding protein, putativeC.G.S.X.
0.043e-136Triticum aestivumTaAffx.115126.1.S1_atCA618118--3e-1At5g03710unknown proteinC.G.S.X.
0.044e-134Vitis vinifera1622069_atCD801772--2e+0At1g74340dolichol phosphate-mannose biosynthesis regulatory protein-relatedC.G.S.X.
0.045e-134Zea maysZm.11463.1.S1_atAW355985hypothetical protein LOC100191695-6e-1At5g39510SGR4 (SHOOT GRAVITROPSIM 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006944The joining of two lipid bilayers to form a single membrane.
SGO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
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