CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39580

Gene name peroxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g39580 833954 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO S.X. H.G.
0.56 73.0 At1g16130 838182 WAKL2 (wall associated kinase-like 2) wall-associated kinase like S.X. H.G.
0.51 66.3 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family S.X. H.G.
0.51 66.3 At2g27660 817312 DC1 domain-containing protein F:zinc ion binding;P:unknown;C:chloroplast;BPMOFVA S.X. H.G.
0.51 66.3 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.50 65.3 At2g22880 816819 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.49 63.5 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.48 62.5 At4g01250 827896 WRKY22 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.47 61.2 At1g61560 842450 MLO6 (MILDEW RESISTANCE LOCUS O 6) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.46 59.8 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
124.6 99.9 E-NASC-76-raw-cel-1359878900
118.3 99.9 E-NASC-76-raw-cel-1359878976
115.6 99.9 E-MEXP-1094-raw-cel-1379507313
112.0 99.9 E-MEXP-1094-raw-cel-1379507273
111.8 99.9 E-NASC-76-raw-cel-1359879158
95.6 99.9 E-MEXP-807-raw-cel-1173273116
88.7 99.9 E-MEXP-807-raw-cel-1173273060
78.7 99.9 E-MEXP-807-raw-cel-1173273170
75.3 99.9 E-NASC-76-raw-cel-1359878951
73.8 99.9 E-MEXP-807-raw-cel-1173273223
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 1e-69 264 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity C.G. S.X.
0.03 1e-7 57 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB C.G. S.X.
0.03 1e-4 48 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM C.G. S.X.
0.03 2e-3 44 At5g19880 832110 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to ethylene stimulus, response to oxidative stress, response to virus, N-terminal protein myristoylation;C:endomembrane system;PFOM C.G. S.X.
0.04 2e-3 44 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB C.G. S.X.
0.03 2e-3 44 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.02 8e-3 42 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM C.G. S.X.
0.06 3e-2 40 At4g26010 828707 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 7e-7 56 Glycine max GmaAffx.91353.1.S1_x_at CF807078 peroxidase - 3e-7 At5g39580 peroxidase, putative C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig12240_at Contig12240 - - 1e+0 At5g25810 tny (TINY) C.G. S.X.
0.04 1e-2 42 Oryza sativa Os07g0677600 AK060984.1 - Cationic peroxidase 1e-2 At5g39580 peroxidase, putative C.G. S.X.
0.07 7e-4 46 Populus trichocarpa PtpAffx.225092.1.S1_at pmrna44190 hypothetical protein - 8e-9 At2g41480 electron carrier/ heme binding / peroxidase C.G. S.X.
0.04 1e-4 48 Triticum aestivum TaAffx.112720.1.S1_x_at CA621571 - - 7e-5 At5g39580 peroxidase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1610628_at CF213924 hypothetical protein LOC100267732 - 2e-5 At5g42180 peroxidase 64 (PER64) (P64) (PRXR4) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.651.1.A1_at AI715079 - - 1e+1 At5g39580 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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