Gene omics information

Query gene ID At5g39520
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOS.X.H.G.
0.6781.6At1g09500837475cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseS.X.H.G.
0.4457.2At2g45570819165CYP76C2member of CYP76CS.X.H.G.
0.2217.5At4g18980827634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.124.9At4g24000828500ATCSLG2encodes a protein similar to cellulose synthaseS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
131.899.9GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
112.099.9GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
97.699.9GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
95.599.9GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
93.299.9GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
92.899.9GSM133736Buchanan-Wollaston_A-8-bwoll-Ei2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
89.599.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
88.699.9GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.701e-102373At5g39530833949unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPC.G.S.X.
0.021e+034At4g09940826584avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAVC.G.S.X.
0.015e+032At5g08470830746PEX1 (peroxisome 1)an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.C.G.S.X.
0.025e+032At5g56490835750FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BOFPMAC.G.S.X.
0.015e+032At5g01890831677leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.015e+032At5g06580830546FAD linked oxidase family proteinEncodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo.C.G.S.X.
0.015e+032At4g04980825839-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVAC.G.S.X.
0.015e+032At4g24430828545lyaseF:lyase activity;P:biological_process unknown;C:plasma membrane;PFBC.G.S.X.
0.015e+032At3g15160820747unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.71775.1.S1_atAW277471--4e+0At5g12030AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)C.G.S.X.
0.033e+032Hordeum vulgareContig2647_s_atContig2647--5e-15At4g3198560S ribosomal protein L39 (RPL39C)C.G.S.X.
0.021e+132Oryza sativaOs04g0619200AK063487.1-Hypothetical protein3e+0Atmg00940-C.G.S.X.
0.173e-550Populus trichocarpaPtpAffx.140926.1.S1_atCV239696hypothetical protein-2e-5At5g39520unknown proteinC.G.S.X.
0.031e+034Triticum aestivumTaAffx.81575.1.S1_atCA684379--1e+0At5g39520unknown proteinC.G.S.X.
0.041e-136Vitis vinifera1616783_atCF405837hypothetical protein LOC100267386-9e-11At1g23800ALDH2B7C.G.S.X.
0.032e+032Zea maysZm.2984.2.A1_atCF059668--3e+0At5g39520unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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