CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39420

Gene name cdc2cAt (Arabidopsis thaliana cdc2c)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g39420 833938 cdc2cAt (Arabidopsis thaliana cdc2c) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA S.X. H.G.
0.83 91.4 At3g02810 821236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.83 91.4 At4g27790 828892 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.82 90.9 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. S.X. H.G.
0.80 89.8 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase S.X. H.G.
0.78 88.6 At1g58120 842179 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.78 88.6 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA S.X. H.G.
0.77 88.0 At3g09530 820110 ATEXO70H3 (exocyst subunit EXO70 family protein H3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.76 87.4 At2g43230 818924 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.76 87.4 At3g06260 819800 GATL4 (Galacturonosyltransferase-like 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
199.2 100.0 E-MEXP-285-raw-cel-440782791
183.4 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
180.2 100.0 E-MEXP-1138-raw-cel-1432772970
173.8 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
169.0 100.0 E-MEXP-1138-raw-cel-1432772650
168.8 100.0 E-MEXP-1138-raw-cel-1432772682
164.0 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
150.4 99.9 E-MEXP-1138-raw-cel-1432772554
145.5 99.9 E-MEXP-285-raw-cel-440782725
144.7 99.9 E-MEXP-1138-raw-cel-1432772586
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-32 141 At3g01085 821283 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOFBVA C.G. S.X.
0.11 1e-12 75 At1g74330 843774 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.03 3e-7 57 At5g50860 835158 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA C.G. S.X.
0.17 3e-7 57 At1g18670 838448 IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1) Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. C.G. S.X.
0.05 4e-6 54 At1g33770 840268 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.04 2e-5 52 At4g10010 826592 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.04 6e-5 50 At1g54610 841903 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Glycine max GmaAffx.76355.3.S1_at BM891780 - - 1e-13 At1g54610 protein kinase family protein C.G. S.X.
0.04 8e-3 42 Hordeum vulgare Contig14838_at Contig14838 - - 1e-5 At5g10270 CDKC C.G. S.X.
0.04 5e-1 38 Oryza sativa Os07g0596600 AK067238.1 - Protein kinase domain containing protein 7e-9 At1g74330 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.19 2e-8 61 Populus trichocarpa PtpAffx.213964.1.S1_at pmrna27213 hypothetical protein - 9e-9 At5g39420 cdc2cAt (Arabidopsis thaliana cdc2c) C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.120016.1.S1_at BJ247556 - - 4e-7 At1g09600 protein kinase family protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1618937_at CB920899 hypothetical protein LOC100255532 - 2e-14 At4g29960 unknown protein C.G. S.X.
0.04 4e-4 46 Zea mays Zm.1358.1.S1_at AY106948.1 hypothetical protein LOC100193551 - 2e-7 At5g50860 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage