CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g39390

Gene name leucine-rich repeat family protein / protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.44 57.2 At5g05050 830387 peptidase C1A papain family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMO S.X. H.G.
0.44 57.2 At3g59460 825115 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.42 53.9 At5g40290 834027 metal-dependent phosphohydrolase HD domain-containing protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOAMPFV S.X. H.G.
0.41 52.4 At2g39320 818517 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.39 48.4 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.39 48.4 At4g38990 830054 AtGH9B16 (Arabidopsis thaliana glycosyl hydrolase 9B16) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system S.X. H.G.
0.38 46.7 At5g49750 835038 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.37 45.0 At1g35515 840446 HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10) Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress. S.X. H.G.
0.37 45.0 At2g23945 816927 chloroplast nucleoid DNA-binding protein-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOF S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1193.5 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
499.0 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
290.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
275.1 100.0 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
220.2 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
195.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
190.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
186.9 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
165.0 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 0 898 At5g20480 832170 EFR (EF-TU RECEPTOR) Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu. C.G. S.X.
0.20 4e-30 133 At3g47570 823911 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.24 7e-29 129 At3g47580 823912 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.21 6e-20 99 At3g47090 823862 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.15 2e-17 91 At3g47110 823864 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 8e-4 46 At5g66790 836812 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e-3 44 At5g55830 835677 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 1e-2 42 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata C.G. S.X.
0.01 1e-2 42 At1g67580 843079 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-5 50 Glycine max GmaAffx.65419.1.S1_at CD405955 - - 1e-6 At2g43230 serine/threonine protein kinase, putative C.G. S.X.
0.05 6e-9 61 Hordeum vulgare Contig24048_at Contig24048 - - 5e-9 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.06 2e-12 75 Oryza sativa OsAffx.30858.1.S1_at - - - 0 C.G. S.X.
0.06 1e-6 56 Populus trichocarpa PtpAffx.224382.1.S1_at pmrna42860 hypothetical protein - 1e-6 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.05 2e-1 38 Triticum aestivum Ta.26189.1.A1_at CD452631 - - 1e-1 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1621360_at CF206121.1 - - 3e+0 At2g02740 WHY3 (WHIRLY 3) C.G. S.X.
0.03 9e-8 57 Zea mays Zm.6463.1.A1_at AW066999 hypothetical protein LOC100272541 - 2e-5 At2g28590 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage