Gene omics information

Query gene ID At5g39350
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g39350833931pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBAS.X.H.G.
0.4050.8At3g26780822292catalyticF:catalytic activity;P:N-terminal protein myristoylation, metabolic process;C:cytosol, mitochondrion;BOMPFAS.X.H.G.
0.3643.6At5g52850835362pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.3133.8At3g23330821914pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.2217.5At5g08310830727pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
264.6100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
147.099.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
125.699.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
123.199.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
118.199.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
103.299.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
102.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
98.199.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
95.999.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
93.399.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-242Atmg00640--encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex.C.G.S.X.
0.012e-242At3g26540822262pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.017e-240At4g02750828187pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:mitochondrion;POMFBC.G.S.X.
0.017e-240At4g37170829871pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBC.G.S.X.
0.017e-240At2g22070816742pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.027e-240At1g17630838340pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.013e-138At4g18820827616ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication;C:plasma membrane;BOMFAPVC.G.S.X.
0.013e-138At3g22690821840pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBAC.G.S.X.
0.023e-138At3g46790823832CRR2 (CHLORORESPIRATORY REDUCTION 2)Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.44155.1.S1_atAW757000--3e-3At1g31430pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.011e-138Hordeum vulgareHB20H10r_atHB20H10r--1e+0At4g24015zinc finger (RING-H2 type) protein-relatedC.G.S.X.
0.028e-344Oryza sativaOs02g0680500AK106401.1-Protein prenyltransferase domain containingprotein3e-3At5g39350pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.034e-448Populus trichocarpaPtpAffx.204150.1.S1_atpmrna8176hypothetical protein-7e-5At5g16860pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-138Triticum aestivumTaAffx.24590.1.S1_atCA716574--8e-1At1g15550GA3OX1 (GIBBERELLIN 3-OXIDASE 1)C.G.S.X.
0.015e+032Vitis vinifera1620949_x_atCF202514.1--5e-1At5g03240UBQ3 (POLYUBIQUITIN 3)C.G.S.X.
0.021e-138Zea maysZmAffx.1355.1.S1_at40794996-45--7e-138Atmg00640-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage