CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38950

Gene name germin-like protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g38950 833887 germin-like protein-related F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At2g11650 3767819 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.46 59.8 At3g30560 822770 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.41 52.4 At5g07310 830622 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. S.X. H.G.
0.39 48.4 At2g10380 815497 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.37 45.0 At2g11360 815607 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.34 39.8 At1g46336 841111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.32 35.7 At3g44000 3769616 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.32 35.7 At1g35150 840402 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP S.X. H.G.
0.31 33.8 At3g43470 823432 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
629.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
327.0 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
325.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
268.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
250.4 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
243.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.2 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
233.9 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
216.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.5 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 1e-23 109 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.20 5e-20 97 At5g38940 833886 manganese ion binding / nutrient reservoir F:manganese ion binding, nutrient reservoir activity;P:response to salt stress;C:cell wall;PFOB C.G. S.X.
0.22 1e-14 79 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. C.G. S.X.
0.16 1e-11 69 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO C.G. S.X.
0.30 4e-8 57 At5g38960 833888 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.03 6e-1 34 At5g18940 832012 Mo25 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.04 6e-1 34 At3g04180 819573 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBA C.G. S.X.
0.07 6e-1 34 At3g04190 819574 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Glycine max GmaAffx.34172.3.S1_at AW620587 - - 9e-10 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein C.G. S.X.
0.10 5e-3 40 Hordeum vulgare Contig3157_at Contig3157 - - 1e-2 At5g38950 germin-like protein-related C.G. S.X.
0.10 7e-2 38 Oryza sativa Os08g0189900 AF141879.1 - Oxalate oxidase-like protein or germin-likeprotein (Germin-like 8) (Germin-like 12) 1e-1 At5g38950 germin-like protein-related C.G. S.X.
0.16 2e-10 65 Populus trichocarpa PtpAffx.211045.1.S1_s_at pmrna21695 hypothetical protein - 1e-6 At5g38930 germin-like protein, putative C.G. S.X.
0.12 4e-2 38 Triticum aestivum Ta.24453.1.S1_at CA615555 - - 6e-2 At5g38950 germin-like protein-related C.G. S.X.
0.05 3e+0 30 Vitis vinifera 1608026_at CB982380 germin-like protein 7 - 1e-4 At5g39120 germin-like protein, putative C.G. S.X.
0.04 4e+0 30 Zea mays ZmAffx.570.1.A1_at AI714682 hypothetical protein LOC100191413 - 1e-2 At2g04280 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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