CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38910

Gene name germin-like protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB S.X. H.G.
0.30 32.1 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.30 32.1 At3g26460 822251 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At2g15120 3768033 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.29 30.3 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.28 30.3 At4g31970 829327 CYP82C2 member of CYP82C S.X. H.G.
0.27 26.2 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.25 22.6 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO S.X. H.G.
0.20 14.4 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.20 14.4 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
463.5 100.0 E-MEXP-791-raw-cel-1122937587
456.0 100.0 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
316.6 100.0 E-MEXP-791-raw-cel-1122937623
218.7 100.0 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
209.2 100.0 GSM142674 SF002_ATH1_A5-Fille-WTnodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
183.2 100.0 GSM291023 root - 08% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
165.6 100.0 GSM290753 root - 01% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
142.6 99.9 GSM142675 SF002_ATH1_A6-Fille-WT+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
139.0 99.9 GSM184555 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.9 99.9 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.79 2e-89 329 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO C.G. S.X.
0.78 5e-80 297 At5g38940 833886 manganese ion binding / nutrient reservoir F:manganese ion binding, nutrient reservoir activity;P:response to salt stress;C:cell wall;PFOB C.G. S.X.
0.66 1e-56 220 At5g38960 833888 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.52 3e-26 119 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. C.G. S.X.
0.24 3e-23 109 At5g38950 833887 germin-like protein-related F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 3e-7 56 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) C.G. S.X.
0.08 9e-5 48 At3g04190 819574 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.12 1e-3 44 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO C.G. S.X.
0.12 1e-3 44 At5g39120 833905 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-6 52 Glycine max Gma.5568.1.S1_at BM107847 - - 3e-6 At5g38910 germin-like protein, putative C.G. S.X.
0.08 1e-2 40 Hordeum vulgare Contig1517_at Contig1517 - - 2e-2 At5g39120 germin-like protein, putative C.G. S.X.
0.10 3e-3 44 Oryza sativa Os04g0617900 AK109057.1 - Germin-like protein precursor 8e-3 At5g26700 germin-like protein, putative C.G. S.X.
0.15 5e-4 46 Populus trichocarpa PtpAffx.211042.1.S1_s_at pmrna21692 hypothetical protein - 5e-6 At5g38930 germin-like protein, putative C.G. S.X.
0.04 6e-3 42 Triticum aestivum TaAffx.57385.1.S1_x_at BJ220209 - - 8e-6 At5g26700 germin-like protein, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617381_at CF405888 - - 3e+0 At5g43430 ETFBETA C.G. S.X.
0.06 2e+0 32 Zea mays Zm.2525.1.A1_at BM380204 germin-like protein subfamily 1 member 11 - 3e-2 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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