CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38900

Gene name DSBA oxidoreductase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
0.67 81.6 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase S.X. H.G.
0.50 65.3 At1g67980 843126 CCoAMT Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase. S.X. H.G.
0.50 65.3 At2g30770 817628 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13) putative cytochrome P450 S.X. H.G.
0.46 59.8 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.33 38.1 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV S.X. H.G.
0.27 26.2 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.8 99.9 GSM131140 AtGen_B-26_2-5-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
75.0 99.9 GSM131112 AtGen_B-40_3-5-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
52.1 99.8 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
51.8 99.8 E-MEXP-739-raw-cel-1099467321
48.5 99.8 E-MEXP-546-raw-cel-863289532
45.1 99.8 E-TABM-60-raw-cel-680980342
44.6 99.8 E-ATMX-25-raw-cel-1441077482
43.5 99.8 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
40.3 99.8 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
40.3 99.8 E-ATMX-25-raw-cel-1441077500
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At1g11730 837717 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO C.G. S.X.
0.03 1e+0 34 At5g47130 834759 Bax inhibitor-1 family / BI-1 family F:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFV C.G. S.X.
0.01 1e+0 34 At5g53150 835396 heat shock protein binding / unfolded protein binding F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.02 1e+0 34 At4g13190 826933 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 1e+0 34 At1g20330 838621 SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. C.G. S.X.
0.02 1e+0 34 At1g14500 838012 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.02 5e+0 32 At5g11170 830986 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-3 44 Glycine max Gma.1677.1.S1_a_at BE190184 - - 2e-3 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.11 1e-14 79 Hordeum vulgare Contig10799_at Contig10799 - - 4e-14 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.11 3e-9 63 Oryza sativa Os03g0598900 AU096721 - DSBA oxidoreductase family protein 2e-9 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.06 1e-4 48 Populus trichocarpa Ptp.7147.2.S1_at CV278828 - - 2e-2 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.10 6e-9 61 Triticum aestivum TaAffx.54899.1.S1_at AJ615038 - - 1e-8 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612586_at CB342344 hypothetical protein LOC100261077 - 4e+0 At2g24625 - C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1014.1.A1_at AI881465 - - 2e-1 At1g59750 ARF1 (AUXIN RESPONSE FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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