CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38710

Gene name proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At5g38710 833862 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA S.X. H.G.
0.41 52.4 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
0.37 45.0 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.36 43.6 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.36 43.6 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF S.X. H.G.
0.33 38.1 At1g20510 838639 OPCL1 (OPC-8:0 COA LIGASE1) F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV S.X. H.G.
0.33 38.1 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV S.X. H.G.
0.31 33.8 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.27 26.2 At3g10300 820192 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV S.X. H.G.
0.24 20.7 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.3 99.9 E-MEXP-98-raw-cel-320189024
119.0 99.9 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
110.2 99.9 E-MEXP-98-raw-cel-320188804
98.9 99.9 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
95.2 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
93.0 99.9 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
80.5 99.9 E-MEXP-98-raw-cel-320188859
79.3 99.9 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
76.6 99.9 E-MEXP-546-raw-cel-863289424
71.0 99.9 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 5e-48 192 At3g30775 822833 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. C.G. S.X.
0.02 7e-1 36 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.01 7e-1 36 At3g11402 820312 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 3e+0 34 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.02 3e+0 34 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF C.G. S.X.
0.01 3e+0 34 At5g36230 833620 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein F:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOV C.G. S.X.
0.01 3e+0 34 At4g00200 828162 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
0.01 3e+0 34 At3g49210 824082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA C.G. S.X.
0.01 3e+0 34 At2g33240 817886 XID member of Myosin-like proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max GmaAffx.93310.1.S1_at CF809035 proline dehydrogenase - 6e-3 At5g38710 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative C.G. S.X.
0.03 5e+0 32 Hordeum vulgare HS08F16u_at HS08F16u - - 2e+0 At1g47265 unknown protein C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.23727.1.S1_x_at - - - 0 C.G. S.X.
0.06 2e-2 42 Populus trichocarpa PtpAffx.160223.1.A1_at BP931204 hypothetical protein - 8e-8 At3g30775 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.7237.1.S1_at CA664506 - - 5e+0 At4g37140 MEE69 (MATERNAL EFFECT EMBRYO ARREST 69) C.G. S.X.
0.03 9e-4 44 Vitis vinifera 1621342_at CF206330.1 - - 2e-3 At5g38710 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.894.1.A1_at AI770873 - - 8e-1 At5g62300 40S ribosomal protein S20 (RPS20C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006537 The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
C GO:0006562 The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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