CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38660

Gene name APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g38660 833856 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) mutant has Altered acclimation responses; S.X. H.G.
0.71 84.2 At2g01110 814640 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. S.X. H.G.
0.67 81.6 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO S.X. H.G.
0.63 78.1 At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO S.X. H.G.
0.56 73.0 At3g10060 820167 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA S.X. H.G.
0.50 65.3 At3g02730 821260 TRXF1 (THIOREDOXIN F-TYPE 1) F:enzyme activator activity;P:positive regulation of catalytic activity;C:chloroplast, chloroplast stroma;BOMPFAV S.X. H.G.
0.32 35.7 At3g15360 820775 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) encodes a prokaryotic thioredoxin S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.8 GSM170897 Col-0 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
7.0 98.7 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
6.9 98.7 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
6.8 98.7 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
6.7 98.7 E-MEXP-809-raw-cel-1123684107
6.7 98.7 GSM133832 Walters_A-11-Kruger-MH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
6.4 98.6 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
6.3 98.6 GSM133831 Walters_A-10-Kruger-MH1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
6.3 98.6 GSM131464 AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
6.2 98.6 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At3g47160 823869 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF C.G. S.X.
0.03 2e+0 34 At5g43650 834385 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFB C.G. S.X.
0.01 2e+0 34 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.01 2e+0 34 At3g28980 822538 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA C.G. S.X.
0.01 2e+0 34 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV C.G. S.X.
0.01 2e+0 34 At3g10280 820190 KCS14 (3-KETOACYL-COA SYNTHASE 14) Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 2e+0 34 At2g46020 819210 transcription regulatory protein SNF2, putative Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. C.G. S.X.
0.01 2e+0 34 At2g46720 819284 KCS13 (3-KETOACYL-COA SYNTHASE 13) Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 7e-16 85 Glycine max Gma.12387.1.S1_at CD417814 - - 7e-16 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.17 9e-7 54 Hordeum vulgare Contig3270_s_at Contig3270 - - 2e-6 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.16 2e-4 48 Oryza sativa Os08g0359000 AK066474.1 - Conserved hypothetical protein 2e-4 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.48 3e-30 133 Populus trichocarpa PtpAffx.204053.1.S1_x_at pmrna7991 hypothetical protein - 2e-30 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.15 5e-7 56 Triticum aestivum Ta.2406.1.S1_a_at BG907004 - - 7e-7 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.32 3e-33 141 Vitis vinifera 1620193_at CA816858 hypothetical protein LOC100242947 - 1e-32 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.08 3e-9 61 Zea mays Zm.8179.1.A1_at CO534834 hypothetical protein LOC100191267 - 1e-8 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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