Gene omics information

Query gene ID At5g38500
Gene name DNA binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8290.9At5g38500833838DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBS.X.H.G.
0.7788.0At1g50680841490AP2 domain-containing transcription factor, putativeF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POVS.X.H.G.
0.7586.9At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.7586.9At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFS.X.H.G.
0.7385.5At1g65120842819ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBVS.X.H.G.
0.7385.5At2g33010817863ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.7385.5At5g14560831307unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7284.8At1g32390840132transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7184.2At3g49170824078EMB2261 (embryo defective 2261)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBS.X.H.G.
0.7083.5At5g18160831934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
347.8100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
313.6100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
299.4100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
287.6100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
279.2100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
268.0100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
264.1100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
259.7100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
251.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
245.4100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.611e-110400At5g38490833837DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.173e-1583At3g49610824123DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PBC.G.S.X.
0.141e-552At5g24050832470DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.074e-550At3g24850822083DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.104e-240At1g05930837103DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.014e-240At1g56560842110beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPBC.G.S.X.
0.012e-138At5g20610832183unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAVC.G.S.X.
0.042e-138At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.022e-138At3g44716823600unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.039e-446Glycine maxHgAffx.10438.1.S1_atCB378063--8e-2At5g28610-C.G.S.X.
0.025e+032Hordeum vulgareHT08E01u_s_atHT08E01u--2e+0At2g23320WRKY15C.G.S.X.
0.038e-240Oryza sativaOsAffx.16589.1.S1_at---0C.G.S.X.
0.032e-138Populus trichocarpaPtpAffx.224464.1.S1_atpmrna43023hypothetical protein-7e-3At5g08770unknown proteinC.G.S.X.
0.026e-136Triticum aestivumTaAffx.84576.1.S1_atBJ225234--3e-1At5g28610-C.G.S.X.
0.022e-136Vitis vinifera1612737_atCF568834--6e-2At1g28700unknown proteinC.G.S.X.
0.024e+032Zea maysZm.4378.1.A1_atCK370715hypothetical protein LOC100194381-1e+0At1g06475unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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