CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38500

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB S.X. H.G.
0.77 88.0 At1g50680 841490 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV S.X. H.G.
0.75 86.9 At1g76780 844012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.75 86.9 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.73 85.5 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV S.X. H.G.
0.73 85.5 At2g33010 817863 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.73 85.5 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.72 84.8 At1g32390 840132 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.71 84.2 At3g49170 824078 EMB2261 (embryo defective 2261) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFB S.X. H.G.
0.70 83.5 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
347.8 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
313.6 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
299.4 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
287.6 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
279.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
268.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
264.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
259.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
251.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
245.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 1e-110 400 At5g38490 833837 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.17 3e-15 83 At3g49610 824123 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PB C.G. S.X.
0.14 1e-5 52 At5g24050 832470 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.07 4e-5 50 At3g24850 822083 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.10 4e-2 40 At1g05930 837103 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.01 4e-2 40 At1g56560 842110 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB C.G. S.X.
0.01 2e-1 38 At5g20610 832183 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAV C.G. S.X.
0.04 2e-1 38 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 2e-1 38 At3g44716 823600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-4 46 Glycine max HgAffx.10438.1.S1_at CB378063 - - 8e-2 At5g28610 - C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HT08E01u_s_at HT08E01u - - 2e+0 At2g23320 WRKY15 C.G. S.X.
0.03 8e-2 40 Oryza sativa OsAffx.16589.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.224464.1.S1_at pmrna43023 hypothetical protein - 7e-3 At5g08770 unknown protein C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.84576.1.S1_at BJ225234 - - 3e-1 At5g28610 - C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1612737_at CF568834 - - 6e-2 At1g28700 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4378.1.A1_at CK370715 hypothetical protein LOC100194381 - 1e+0 At1g06475 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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