CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38390

Gene name F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g38390 833824 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.58 73.8 At5g26640 832725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.49 63.5 At4g35170 829670 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.46 59.8 At3g42940 823349 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At4g22440 828339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.43 55.3 At4g38070 829963 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAV S.X. H.G.
0.41 52.4 At2g34280 817989 S locus F-box-related / SLF-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.41 52.4 At5g35640 833536 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At3g31430 822909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At3g30830 3769152 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
457.4 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
394.5 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
314.5 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
275.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
233.4 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
187.6 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
180.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
172.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
135.0 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
127.5 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 1e-134 480 At5g38396 833826 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.69 9e-130 464 At5g38386 833823 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.53 9e-130 464 At1g52650 841697 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.51 4e-107 389 At4g13960 827030 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.41 8e-87 321 At3g58820 825051 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.49 1e-76 287 At3g59000 825069 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.33 1e-48 194 At3g03040 821150 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.17 1e-42 174 At3g58890 825058 syntaxin-related family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Glycine max Gma.6890.1.A1_at BU550718 - - 1e-1 At2g31710 unknown protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig22670_at Contig22670 - - 7e+0 Atmg00285 - C.G. S.X.
0.02 5e+0 34 Oryza sativa Os11g0306900 9639.m01885 - - 9e-1 At3g59000 F-box family protein C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.209678.1.S1_at pmrna19104 hypothetical protein - 5e-5 At5g38386 F-box family protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.10155.1.A1_at BQ237997 - - 2e+1 At5g48760 60S ribosomal protein L13A (RPL13aD) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1607820_at CB975566 - - 6e+0 At3g47836 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.4796.1.A1_a_at CF632458 hypothetical protein LOC100279432 /// protein mago nashi - 1e-16 At1g02140 MAGO (MAGO NASHI) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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