Gene omics information

Query gene ID At5g38300
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g38300833812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.5065.3At1g23790838990unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBOS.X.H.G.
0.2930.3At5g01910831775unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFS.X.H.G.
0.2319.3At5g63920836513DNA topoisomerase III alpha, putativeF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFVS.X.H.G.
0.168.8At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.157.8At5g43080834324CYCA3F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVS.X.H.G.
0.124.9At2g39880818575MYB25 (myb domain protein 25)Encodes a putative transcription factor (MYB25).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
287.8100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
162.099.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
86.499.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.099.8GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
56.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.099.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
50.499.8GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
47.199.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.999.8GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.201e-1377At1g67035843023unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.033e-550At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAC.G.S.X.
0.043e-550At1g75550843891glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.024e-446At1g17790838357DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:chloroplast;MOFBPVAC.G.S.X.
0.026e-342At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAC.G.S.X.
0.026e-342At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVC.G.S.X.
0.033e-240At5g46730834716glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.013e-240At5g51330835207SWI1 (SWITCH1)Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-446Glycine maxGma.9692.1.A1_atBG362937--1e-3At5g53590auxin-responsive family proteinC.G.S.X.
0.035e-238Hordeum vulgareContig15910_atContig15910--3e-4At1g02710glycine-rich proteinC.G.S.X.
0.048e-446Oryza sativaOs10g0540000AK063094.1-Hypothetical protein3e-3At1g15840unknown proteinC.G.S.X.
0.042e-344Populus trichocarpaPtpAffx.207592.1.S1_atpmrna15066hypothetical protein-3e+0At5g14370-C.G.S.X.
0.047e-342Triticum aestivumTa.16013.1.S1_atCA595031--3e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)C.G.S.X.
0.041e-136Vitis vinifera1617334_s_atCF607954--1e-9At5g65660hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.032e-136Zea maysZm.4720.1.S1_atAY108931.1--7e-2At5g13910LEP (LEAFY PETIOLE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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