Gene omics information

Query gene ID At5g38290
Gene name peptidyl-tRNA hydrolase family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g38290833811peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFMS.X.H.G.
0.6982.9At3g60370825208immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinEncodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.S.X.H.G.
0.6075.7At1g22700838876tetratricopeptide repeat (TPR)-containing proteinEncodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.S.X.H.G.
0.5873.8At4g37510829906ribonuclease III family proteinF:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFPS.X.H.G.
0.5873.8At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBS.X.H.G.
0.5673.0At3g24590822055PLSP1 (plastidic type I signal peptidase 1)Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).S.X.H.G.
0.5673.0At2g26900817231bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport, organic anion transport;C:membrane, chloroplast envelope;OBMPAFS.X.H.G.
0.5673.0At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinS.X.H.G.
0.5570.6At5g52960835373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPS.X.H.G.
0.5469.5At3g25480822132rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.399.6GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.799.6GSM134375St.Clair_1-36_454b_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
13.899.4GSM134364St.Clair_1-25_345_Cvi-1_0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
11.899.3GSM134374St.Clair_1-35_373_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
11.499.3GSM134360St.Clair_1-21_429_Cvi-1_0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
11.199.2GSM134363St.Clair_1-24_437_Cvi-1_0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
10.599.2GSM134366St.Clair_1-27_449_Cvi-1_0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
10.399.2GSM134370St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.029e-238At1g06530837164myosin heavy chain-relatedF:unknown;P:unknown;C:mitochondrion, plasma membrane, plastid;MOBFPAVC.G.S.X.
0.034e-136At5g51780835252basix helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMC.G.S.X.
0.154e-136At5g16140831471peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;BOPFMC.G.S.X.
0.024e-136At3g11330820306leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MPBOFAVC.G.S.X.
0.021e+034At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.C.G.S.X.
0.011e+034At3g56870824854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBC.G.S.X.
0.021e+034At1g55200841963protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.161e-1481Glycine maxGma.15701.2.S1_atBQ094867--4e-6At5g16140peptidyl-tRNA hydrolase family proteinC.G.S.X.
0.033e+032Hordeum vulgareContig23726_atContig23726--4e+0At3g15605-C.G.S.X.
0.032e-138Oryza sativaOsAffx.32227.1.A1_at---0C.G.S.X.
0.192e-654Populus trichocarpaPtpAffx.21395.1.S1_atAI162403hypothetical protein-3e-6At5g38290peptidyl-tRNA hydrolase family proteinC.G.S.X.
0.112e-963Triticum aestivumTa.13018.1.S1_atCA624164--3e-9At5g38290peptidyl-tRNA hydrolase family proteinC.G.S.X.
0.077e-650Vitis vinifera1619329_atCB343265hypothetical protein LOC100248112-1e-21At5g16140peptidyl-tRNA hydrolase family proteinC.G.S.X.
0.033e+032Zea maysZm.5103.1.A1_atAI600852--3e-15At3g13460ECT2C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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