CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38290

Gene name peptidyl-tRNA hydrolase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g38290 833811 peptidyl-tRNA hydrolase family protein F:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFM S.X. H.G.
0.69 82.9 At3g60370 825208 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. S.X. H.G.
0.60 75.7 At1g22700 838876 tetratricopeptide repeat (TPR)-containing protein Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. S.X. H.G.
0.58 73.8 At4g37510 829906 ribonuclease III family protein F:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFP S.X. H.G.
0.58 73.8 At5g11450 831016 oxygen-evolving complex-related F:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PB S.X. H.G.
0.56 73.0 At3g24590 822055 PLSP1 (plastidic type I signal peptidase 1) Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33). S.X. H.G.
0.56 73.0 At2g26900 817231 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport, organic anion transport;C:membrane, chloroplast envelope;OBMPAF S.X. H.G.
0.56 73.0 At5g14660 831318 PDF1B (PEPTIDE DEFORMYLASE 1B) encodes a peptide deformylase-like protein S.X. H.G.
0.55 70.6 At5g52960 835373 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP S.X. H.G.
0.54 69.5 At3g25480 822132 rhodanese-like domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.3 99.6 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.7 99.6 GSM134375 St.Clair_1-36_454b_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
13.8 99.4 GSM134364 St.Clair_1-25_345_Cvi-1_0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
11.8 99.3 GSM134374 St.Clair_1-35_373_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
11.4 99.3 GSM134360 St.Clair_1-21_429_Cvi-1_0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
11.1 99.2 GSM134363 St.Clair_1-24_437_Cvi-1_0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
10.7 99.2 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.5 99.2 GSM134366 St.Clair_1-27_449_Cvi-1_0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
10.3 99.2 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
9.5 99.1 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-2 38 At1g06530 837164 myosin heavy chain-related F:unknown;P:unknown;C:mitochondrion, plasma membrane, plastid;MOBFPAV C.G. S.X.
0.03 4e-1 36 At5g51780 835252 basix helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM C.G. S.X.
0.15 4e-1 36 At5g16140 831471 peptidyl-tRNA hydrolase family protein F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;BOPFM C.G. S.X.
0.02 4e-1 36 At3g11330 820306 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MPBOFAV C.G. S.X.
0.02 1e+0 34 At5g51020 835175 CRL (CRUMPLED LEAF) Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division. C.G. S.X.
0.01 1e+0 34 At3g56870 824854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.02 1e+0 34 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-14 81 Glycine max Gma.15701.2.S1_at BQ094867 - - 4e-6 At5g16140 peptidyl-tRNA hydrolase family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig23726_at Contig23726 - - 4e+0 At3g15605 - C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.32227.1.A1_at - - - 0 C.G. S.X.
0.19 2e-6 54 Populus trichocarpa PtpAffx.21395.1.S1_at AI162403 hypothetical protein - 3e-6 At5g38290 peptidyl-tRNA hydrolase family protein C.G. S.X.
0.11 2e-9 63 Triticum aestivum Ta.13018.1.S1_at CA624164 - - 3e-9 At5g38290 peptidyl-tRNA hydrolase family protein C.G. S.X.
0.07 7e-6 50 Vitis vinifera 1619329_at CB343265 hypothetical protein LOC100248112 - 1e-21 At5g16140 peptidyl-tRNA hydrolase family protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.5103.1.A1_at AI600852 - - 3e-15 At3g13460 ECT2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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