CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38195

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.91 95.6 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO S.X. H.G.
0.90 95.1 At5g39560 833952 - F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF S.X. H.G.
0.89 94.6 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV S.X. H.G.
0.89 94.6 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At2g15325 816022 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.85 92.4 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At4g17160 827427 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA S.X. H.G.
0.84 91.9 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin S.X. H.G.
0.83 91.4 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
774.4 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
752.2 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
744.2 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
721.8 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
484.3 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
380.1 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
293.3 100.0 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
277.9 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
107.4 99.9 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.4 99.8 E-MEXP-1451-raw-cel-1585200330
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 1e-78 291 At5g38197 5008283 - Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.85 2e-62 238 At5g38180 833798 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.12 2e-3 42 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.08 1e-1 36 At3g29152 5008041 - Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.02 1e-1 36 At3g11850 820358 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.03 5e-1 34 At5g61240 836245 protein binding F:protein binding;P:signal transduction;C:Golgi apparatus;PMBOFA C.G. S.X.
0.02 5e-1 34 At4g37590 829914 NPY5 (NAKED PINS IN YUC MUTANTS 5) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. C.G. S.X.
0.03 2e+0 32 Atmg01200 - - hypothetical protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 32 Glycine max GmaAffx.44139.1.S1_at AW756154 - - 2e+0 At5g38195 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.05 4e+0 30 Hordeum vulgare HT07M09u_at HT07M09u - - 2e-1 At2g24625 - C.G. S.X.
0.06 2e-2 40 Oryza sativa Os.19097.1.S1_at - - - 0 C.G. S.X.
0.06 7e-1 34 Populus trichocarpa PtpAffx.80258.1.S1_at BU868604 - - 5e-1 At5g38195 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 9e+0 30 Triticum aestivum TaAffx.110522.1.S1_at CA658173 - - 9e-1 At3g26616 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1608636_at CF568859 - - 7e-11 At5g47800 phototropic-responsive NPH3 family protein C.G. S.X.
0.05 4e+0 30 Zea mays ZmAffx.1460.1.S1_at 11990232-27 - - 4e-73 Atcg00440 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage