Gene omics information

Query gene ID At5g38150
Gene name PMI15 (plastid movement impaired 15)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g38150833795PMI15 (plastid movement impaired 15)Involved in chloroplast avoidance movement under high-light intensitiesS.X.H.G.
0.3846.7At4g12640826877RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBAS.X.H.G.
0.3846.7At5g61040836225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.3235.7At1g65070842815DNA mismatch repair MutS family proteinF:damaged DNA binding, mismatched DNA binding, ATP binding;P:mismatch repair, maintenance of fidelity during DNA-dependent DNA replication;C:nucleus;BOMFPAVS.X.H.G.
0.3032.1At2g24530816989unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.2930.3At3g12380820416ATARP5 (ACTIN-RELATED PROTEIN 5)Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.S.X.H.G.
0.2930.3At2g30800817631HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.S.X.H.G.
0.2930.3At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBS.X.H.G.
0.2726.2At5g06180830505-F:molecular_function unknown;P:biological_process unknown;C:unknown;OBPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
390.4100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
194.1100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
113.199.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
104.999.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
40.999.8GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.192e-1791At1g66840843002-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.011e-242At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVC.G.S.X.
0.012e-138At5g57380835844VIN3 (VERNALIZATION INSENSITIVE 3)Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.C.G.S.X.
0.012e-138At3g46730823826disease resistance protein (CC-NBS class), putativeF:ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFAC.G.S.X.
0.019e-136At5g06820830573SRF2 (STRUBBELIG-RECEPTOR FAMILY 2)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.029e-136At4g04985825840aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PC.G.S.X.
0.019e-136At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVC.G.S.X.
0.019e-136At3g54800824645pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;POMC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.028e-240Glycine maxGma.11874.1.A1_atCD392800--1e+1At5g38080unknown proteinC.G.S.X.
0.022e+034Hordeum vulgareHT08N20u_atHT08N20u--5e+0At4g28290unknown proteinC.G.S.X.
0.022e+036Oryza sativaOs08g05499009636.m04442-Conserved hypothetical protein2e-1At5g09750HEC3 (HECATE 3)C.G.S.X.
0.012e-242Populus trichocarpaPtpAffx.202613.1.S1_atpmrna5227hypothetical protein-6e-2At1g66840-C.G.S.X.
0.022e-138Triticum aestivumTaAffx.90257.1.S1_atBQ605806--4e+0At3g01500CA1 (CARBONIC ANHYDRASE 1)C.G.S.X.
0.021e+034Vitis vinifera1621670_atCB003758hypothetical protein LOC100245527-6e-3At4g24570mitochondrial substrate carrier family proteinC.G.S.X.
0.022e+034Zea maysZm.4632.1.A1_atAI737439--3e+0Atmg01030-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009637A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
XGO:0009903The relocation process by which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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